Detail information of AT3G09920_circ_g.2


General Information
CircRNA Name AT3G09920_circ_g.2
ID in PlantcircBase ath_circ_020738
Alias At_ciR3641, Ath_circ_FC1884
Organism Arabidpsis thaliana
Position chr3: 3041089-3042364  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ
Parent gene AT3G09920
Parent gene annotation Phosphatidylinositol 4-phosphate 5-kinase 9
Parent gene strand -
Alternative splicing AT3G09920_circ_g.1
Support reads 2
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT3G09920.2:5
AT3G09920.4:5
AT3G09920.1:5
AT3G09920.3:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCCAGCTCGAGGAAAAGTCATCCAAAAACTAGCCCGAGGTCCAAAGTCTGCTGTCCGAACTTGT
CGTCTTTGTATTGGCGTAATTTTCCCCACTGTGTATcatcttcagctacactttccagagcatc
agttgttatactttgagaacggaccaattgggatcttaagtgctgtggagctcgatgatgcaca
ccgagcaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CATCTTCAGCTACACTTTCCAGAGCATCAGTTGTTATACTTTGAGAACGGACCAATTGGGATCT
TAAGTGCTGTGGAGCTCGATGATGCACACCGAGCAAAAGACTGTAATCCATTATGTTCTGTGCT
TCCAAGAACTTGCTATCGATCTCTAGTTGCCTGTTTACACAGCAAGAAAAGAAATTTTAAACTG
CGGAATATGGATTGATAAATGTATATATCTTACAAGAAGGTCCTGGAGAGAGTAATACCTCAGT
AAACCTTCCCGCCAAGAAGTCTCCAAGAAGAAGCTGTAGTTCAGATCTAAATCTTTAAGTATCG
TGTTCTCGTCTATCTCGACTTTGTCTGCAGAGCGTCCCAAGGACGAACCTTTAAGGTCAAATCT
CCGATGGATTCTTAGATCTGTAAAGAACATGTTACCCATCACCACAAAACGGAACTGCAATGGA
AGAGAAATTTTCAAACATAGTTAGTTTTAAGATTGATTTGGATTTCCAAATGTTGCTCTAATGT
TAGAGTTCTACTCTACATCATATTTAGAGGCAGCAATGTCGGCAACTTCAAAGCTAATGATAAT
AAAAAATCAAAATCAGAATCTTGAGGTATTTTGGTTCAGGACCTTTTGACCACTTGATGGTTTG
ATTCTGTGAAGGCCAAAGAATTTAGTAATGAGGGTGTTCTCATATGTCTTCACATGATGATGGT
AATCTGGAAGCATCCTCAGAAGAACCTACACAGTAAATCTGGAAGCTCAATGGGCAGACGGACA
AAGAGTCTACGCAAAGACATGGAGAAAACTAAGAAGATAATGTGAAAACAGAGATGGTGGATAT
GTAAGTAGTCACAAACCTTGACTTCAGATTTCCTGAGTGTTTTGATCATGAACCGATCATCCTG
CGACAGGAAGAAGACGCTGCCGCTCTTCCCTGGAGAAGAAAGTTCTCTTAAAGTATCATTTCCA
CAAATGGACATCATATAATCAGCTGCATCGATCTTGAACATCTCCCTCAGGTTTCTACAAGGTT
TAGCAATGAATATAAACACCAAGGACACAACTACTATAGTTAACATACTACTAAGAAAAAAGTA
TGCAGTACACAAGTTCTAACCTGAATACCATTGGGCAATAGTCCTTCCATTTAAAATCCTCCGA
GTGGTGCGGAGGAGTCATCGTGGAGCCAGCTCGAGGAAAAGTCATCCAAAAACTAGCCCGAGGT
CCAAAGTCTGCTGTCCGAACTTGTCGTCTTTGTATTGGCGTAATTTTCCCCACTGTGTAT
Conservation Information
Conserved circRNAs NA
PMCS 0.176796349
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chen et al., 2017a