Detail information of AT2G30530_circ_g.1


General Information
CircRNA Name AT2G30530_circ_g.1
ID in PlantcircBase ath_circ_015671
Alias 2:13009478-13009864
Organism Arabidpsis thaliana
Position chr2: 13009478-13009864  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G30530
Parent gene annotation At2g30530/T6B20.12
Parent gene strand +
Alternative splicing NA
Support reads 1/1
Tissues seedling;leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G30530.1:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GACTGGTAGGAAAAGCGAGAATCCTTCATTACAGAGAAGATTAGATGCGATCACTTCATCGTTG
AATTACATTGGTGGCACCATTGGTACTGTTGTTGAGgaggtgaataaggcttatgagtatactt
ctatgaagagtttgaatgaaccaaaacgaggcttttggggaagtttagctagtaaagctaaggc
ttttttgg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 294
Transcript exons: 13009478-13009660,13009754-13009864
GAGGTGAATAAGGCTTATGAGTATACTTCTATGAAGAGTTTGAATGAACCAAAACGAGGCTTTT
GGGGAAGTTTAGCTAGTAAAGCTAAGGCTTTTTTGGATGAGGATGATCCTAATCAGTTGCCTCA
AAGTCCTAAGAGAATGGAGCAGAGCATACCTTCTGCGACAACTTCAGGAACTAAGGAAGCTGGT
CAGACTGGTAGGAAAAGCGAGAATCCTTCATTACAGAGAAGATTAGATGCGATCACTTCATCGT
TGAATTACATTGGTGGCACCATTGGTACTGTTGTTGAG

Genomic sequence GAGGTGAATAAGGCTTATGAGTATACTTCTATGAAGAGTTTGAATGAACCAAAACGAGGCTTTT
GGGGAAGTTTAGCTAGTAAAGCTAAGGCTTTTTTGGATGAGGATGATCCTAATCAGTTGCCTCA
AAGTCCTAAGAGAATGGAGCAGAGCATACCTTCTGCGACAACTTCAGGAACTAAGGTTAAAGAC
TAGGTTTTTATAGTTGCATTTGCTCTTCCAATTGTTTTGTGGGGTTGCGTTCTTATGGAGTAGA
AATCCATTTCCATGTTTCAGGAAGCTGGTCAGACTGGTAGGAAAAGCGAGAATCCTTCATTACA
GAGAAGATTAGATGCGATCACTTCATCGTTGAATTACATTGGTGGCACCATTGGTACTGTTGTT
GAG
Conservation Information
Conserved circRNAs NA
PMCS 0.215965966
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020