Detail information of Zm00001d011742_circ_g.2


General Information
CircRNA Name Zm00001d011742_circ_g.2
ID in PlantcircBase zma_circ_009764
Alias zma_circ_0002883, GRMZM2G151614_C1
Organism Zea mays
Position chr8: 160450100-160451807  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method find_circ, CIRI2
Parent gene Zm00001d011742
Parent gene annotation SUPPRESSOR OF ABI3-5
Parent gene strand -
Alternative splicing Zm00001d011742_circ_g.1
Support reads NA
Tissues leaf, root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Zm00001d011742_T048:3
Zm00001d011742_T019:3
Zm00001d011742_T049:2
Zm00001d011742_T047:3
Zm00001d011742_T036:3
Zm00001d011742_T028:3
Zm00001d011742_T016:2
Zm00001d011742_T037:3
Zm00001d011742_T008:2
Zm00001d011742_T011:3
Zm00001d011742_T032:3
Zm00001d011742_T030:3
Zm00001d011742_T045:3
Zm00001d011742_T050:3
Zm00001d011742_T015:2
Zm00001d011742_T006:3
Zm00001d011742_T042:3
Zm00001d011742_T041:3
Zm00001d011742_T022:3
Zm00001d011742_T005:3
Zm00001d011742_T038:3
Zm00001d011742_T001:3
Zm00001d011742_T010:3
Zm00001d011742_T027:3
Zm00001d011742_T034:3
Zm00001d011742_T013:3
Zm00001d011742_T002:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACTGTGCTGTGCCACTGCCATCGTCTTTTTGAGATTCAAAGTTACTGTTCTGTTTGTCATCAGG
ATTGTACTCTTTTGGAGCCCAACCTATGGCATCATAcagtccctcttgccaacccatgttgcgt
agaatacggttacccacattgctttcgtcgattgcgctatcagcggtaataacttcatagtttt
cgttgttg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1278
Transcript exons: 160450100-160450290,160450605-160451516,160451633-160451
807
CAGTCCCTCTTGCCAACCCATGTTGCGTAGAATACGGTTACCCACATTGCTTTCGTCGATTGCG
CTATCAGCGGTAATAACTTCATAGTTTTCGTTGTTGCCAATTTCACCATTAGAACGTTCACCCA
CGCCAGGAGGAAATGGCATCGACCCTATCTCACTTGGACCCTTTCGGGACGGATAGTGACCAGT
TGAATCCAATCCAACAGCATCAGTGCGAAGAGATGATCCATACAGATTCCGTCTTTCTGCAGCT
CGATCCCTGTACTGGGATTGCCCTGGTGCCTCAGAAAACCGACGTTTACCACTCCCAGAAACTC
CCGATGAAGTATTAGAGACTAAGGCAGACACATCAGTTTTGTAGGGTGCAGGAGTTACAAGTTC
CACAGGACTTGTCATTAACCCATTTGATCTTGTGATTATAGTGGTGCGGGAATCAGTGCTCCCG
GCATCAGATAATGCATGAAACGTAGTATCCGACTTGATCACTCCTCTAGTAGAACCTCTTATGA
CACCCATAACTGTAGTACCTAAGCTGTTACTGACAGGTCTAGGCTTTACATCAGAATCCAACAT
TTGGGTCGATGCAATTCCTTGGCGAACAGAATTATCCATAGCATTTTCAAATTCAAAATTTGGC
TTGCTTTTCGAAGAGAAACCAGTTCCACTATGTGAATGATTAAATCTATCATCAGAATTTGGTG
GTTCTTTGTCATCAATGACAATCCGTGCGGCCTGCCCTTCTTGATTCCTTTGCTTCCACATGGC
TAGGACATTGTTCATCTTCTTCTTATTAGCTATGAGACTACTTTTTGAGGCCAACTTAATCTCT
TTTGCCTTCTCCTTTTCTCTCTTTTCTGCAGCCAGGGCTGCATTTGCAGCAGCTTGAACAGCAT
CAGGGAGTGATGTTTTCTTGTTTTGTTTAATTGTGGCAGCAGGCGCAGAGATCACAACCTTTTT
CCCACAAATACTATCTGAGATCATGTTTTCACTGGACGTCTCCCCGGCTGCCTTAGTATTGCTC
TGGTCAGTACAAGGGACATACTGTTGAGTCTGTTGATCGTACGAATACCAAACTCCAGAGTTGC
TGTCATAGTAAAGGCCAGTTGTTCCGTCATAATAGAATCCAGATGCAGAATCATAGTAGTAACC
AGATTTTTCATCCCAAACAAATCCCGACTGTGCTGTGCCACTGCCATCGTCTTTTTGAGATTCA
AAGTTACTGTTCTGTTTGTCATCAGGATTGTACTCTTTTGGAGCCCAACCTATGGCATCATA

Genomic sequence CAGTCCCTCTTGCCAACCCATGTTGCGTAGAATACGGTTACCCACATTGCTTTCGTCGATTGCG
CTATCAGCGGTAATAACTTCATAGTTTTCGTTGTTGCCAATTTCACCATTAGAACGTTCACCCA
CGCCAGGAGGAAATGGCATCGACCCTATCTCACTTGGACCCTTTCGGGACGGATAGTGACCAGC
TTGACAACAGGTAATTTCCAGAAAATCAATAAAAAGCTTACAAACAAAACAAAAAATAAGATTC
CTGAACTGTATGTTGGTCAAGGACATATTCCTATGGTAACAAAAAGACTCCCAGAAATACCAAG
TCAGCCTTATACCAACACTAATACTGACAATGATGCTTCAGCAAAATGATAATGATGAGAATAA
CAAAAAAAATCTGAACGGACAGTATGTTGCTGTTACTAACACATCGTGCTGAAGGAATGACAAT
GGGAAAATGACAACAATTGTACGCGATAAAGAAAAACTTAAGAAAGTGTATTCTTACTTGAATC
CAATCCAACAGCATCAGTGCGAAGAGATGATCCATACAGATTCCGTCTTTCTGCAGCTCGATCC
CTGTACTGGGATTGCCCTGGTGCCTCAGAAAACCGACGTTTACCACTCCCAGAAACTCCCGATG
AAGTATTAGAGACTAAGGCAGACACATCAGTTTTGTAGGGTGCAGGAGTTACAAGTTCCACAGG
ACTTGTCATTAACCCATTTGATCTTGTGATTATAGTGGTGCGGGAATCAGTGCTCCCGGCATCA
GATAATGCATGAAACGTAGTATCCGACTTGATCACTCCTCTAGTAGAACCTCTTATGACACCCA
TAACTGTAGTACCTAAGCTGTTACTGACAGGTCTAGGCTTTACATCAGAATCCAACATTTGGGT
CGATGCAATTCCTTGGCGAACAGAATTATCCATAGCATTTTCAAATTCAAAATTTGGCTTGCTT
TTCGAAGAGAAACCAGTTCCACTATGTGAATGATTAAATCTATCATCAGAATTTGGTGGTTCTT
TGTCATCAATGACAATCCGTGCGGCCTGCCCTTCTTGATTCCTTTGCTTCCACATGGCTAGGAC
ATTGTTCATCTTCTTCTTATTAGCTATGAGACTACTTTTTGAGGCCAACTTAATCTCTTTTGCC
TTCTCCTTTTCTCTCTTTTCTGCAGCCAGGGCTGCATTTGCAGCAGCTTGAACAGCATCAGGGA
GTGATGTTTTCTTGTTTTGTTTAATTGTGGCAGCAGGCGCAGAGATCACAACCTTTTTCCCACA
AATACTATCTGAGATCATGTTTTCACTGGACGTCTCCCCGGCTGCCTTAGTATTGCTCTGGTCA
GTACAAGGGACATACTGTTGAGTCTGTTGATCGTACGAATACCAAACTCCAGAGTTGCTGTCAT
AGTAAAGGCCTACAACACAAGATTACATACTAAAACATAAATGGGAAAAGATCTGTACCGTAAC
ATTACCAACAACATCAGTAGTGGTTTTAACAAAATTTTGATGTGGTAGATCATAAACTTACCAG
TTGTTCCGTCATAATAGAATCCAGATGCAGAATCATAGTAGTAACCAGATTTTTCATCCCAAAC
AAATCCCGACTGTGCTGTGCCACTGCCATCGTCTTTTTGAGATTCAAAGTTACTGTTCTGTTTG
TCATCAGGATTGTACTCTTTTGGAGCCCAACCTATGGCATCATA
Conservation Information
Conserved circRNAs NA
PMCS 0.175871546
Functional Information
Coding potential Y
Potential coding position 160451798-160450184(+)
160451661-160450173(+)
160451399-160450102(-)
160450214-160451797(-)
Potential amino acid sequence MASYSPSCQPMLRRIRLPTLLSSIALSAVITS*(+)
MQNHSSNQIFHPKQIPTVLCHCHRLFEIQSYCSVCHQDCTLLEPNLWHHTVPLANPCCVEYGYP
HCFRRLRYQR*(+)
MISDSICGKKVVISAPAATIKQNKKTSLPDAVQAAANAALAAEKREKEKAKEIKLASKSSLIAN
KKKMNNVLAMWKQRNQEGQAARIVIDDKEPPNSDDRFNHSHSGTGFSSKSKPNFEFENAMDNSV
RQGIASTQMLDSDVKPRPVSNSLGTTVMGVIRGSTRGVIKSDTTFHALSDAGSTDSRTTIITRS
NGLMTSPVELVTPAPYKTDVSALVSNTSSGVSGSGKRRFSEAPGQSQYRDRAAERRNLYGSSLR
TDAVGLDSTGHYPSRKGPSEIGSMPFPPGVGERSNGEIGNNENYEVITADSAIDESNVGNRILR
NMGWQEGLYDAIGWAPKEYNPDDKQNSNFESQKDDGSGTAQSGFVWDEKSGYYYDSASGFYYDG
TTGLYYDSNSGVWYSYDQQTQQYVPCTDQSNTKAAGETSSENMISDSICGKKVVISAPAATIKQ
NKKTSLPDAVQAAANAALAAEKREKEKAKEIKLASKSSLIANKKKMNNVLAMWKQRNQEGQAAR
IVIDDKEPPNSDDRFNHSHSGTGFSSKSKPNFEFENAMDNSVRQGIASTQMLDSDVKPRPVSNS
LGTTVMGVIRGSTRGVIKSDTTFHALSDAGSTDSRTTIITRSNGLMTSPVELVTPAPYKTDVSA
LVSNTSSGVSGSGKRRFSEAPGQSQYRDRAAERRNLYGSSLRTDAVGLDSTGHYPSRKGPSEIG
SMPFPPGVGERSNGEIGNNENYEVITADSAIDESNVGNRILRNMGWQEGLYDAIGWAPKEYNPD
DKQNSNFESQKDDGSGTAQSGFVWDEKSGYYYDSASGFYYDGTTGLYYDSNSGVWYSYDQQTQQ
YVPCTDQSNTKAAGETSSENMISDSICGKKVVISAPAATIKQNKKTSLPDAVQAAANAALAAEK
REKEKAKEIKLASKSSLIANKKKMNNVLAMWKQRNQEGQAARIVIDDKEPPNSDDRFNHSHSGT
GFSSKSKPNFEFENAMDNSVRQGIASTQMLDSDVKPRPVSNSLGTTVMGVIRGSTRGVIKSDTT
FHALSDAGSTDSRTTIITRSNGLMTSPVELVTPAPYKTDVSALVSNTSSGVSGSGKRRFSEAPG
QSQYRDRAAERRNLYGSSLRTDAVGLDSTGHYPSRKGPSEIGSMPFPPGVGERSNGEIGNNENY
EVITADSAIDESNVGNRILRNMGWQEGLYDAIGWAPKEYNPDDKQNSNFESQKDDGSGTAQSGF
VWDEKSGYYYDSASGFYYDGTTGLYYDSNSGVWYSYDQQTQQYVPCTDQSNTKAAGETSSENMI
SDSICGKKVVISAPAATIKQNKKTSLPDAVQAAANAALAAEKREKEKAKEIKLASKSSLIANKK
KMNNVLAMWKQRNQEGQAARIVIDDKEPPNSDDRFNHSHSGTGFSSKSKPNFEFENAMDNSVRQ
GIASTQMLDSDVKPRPVSNSLGTTVMGVIRGSTRGVIKSDTTFHALSDAGSTDSRTTIITRSNG
LMTSPVELVTPAPYKTDVSALVSNTSSGVSGSGKRRFSEAPGQSQYRDRAAERRNLYGSSLRTD
AVGLDSTGHYPSRKGPSEIGSMPFPPGVGERSNGEIGNNENYEVITADSAIDESNVGNRILRNM
GWQEGL(-)
MVKLATTKTMKLLPLIAQSTKAMWVTVFYATWVGKRDCMMP*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description responsive to drought stress
Other Information
References Ma et al., 2021b;Zhang et al., 2019