Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d011742_circ_g.2 |
ID in PlantcircBase | zma_circ_009764 |
Alias | zma_circ_0002883, GRMZM2G151614_C1 |
Organism | Zea mays |
Position | chr8: 160450100-160451807 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | find_circ, CIRI2 |
Parent gene | Zm00001d011742 |
Parent gene annotation |
SUPPRESSOR OF ABI3-5 |
Parent gene strand | - |
Alternative splicing | Zm00001d011742_circ_g.1 |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d011742_T048:3 Zm00001d011742_T019:3 Zm00001d011742_T049:2 Zm00001d011742_T047:3 Zm00001d011742_T036:3 Zm00001d011742_T028:3 Zm00001d011742_T016:2 Zm00001d011742_T037:3 Zm00001d011742_T008:2 Zm00001d011742_T011:3 Zm00001d011742_T032:3 Zm00001d011742_T030:3 Zm00001d011742_T045:3 Zm00001d011742_T050:3 Zm00001d011742_T015:2 Zm00001d011742_T006:3 Zm00001d011742_T042:3 Zm00001d011742_T041:3 Zm00001d011742_T022:3 Zm00001d011742_T005:3 Zm00001d011742_T038:3 Zm00001d011742_T001:3 Zm00001d011742_T010:3 Zm00001d011742_T027:3 Zm00001d011742_T034:3 Zm00001d011742_T013:3 Zm00001d011742_T002:3 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.175871546 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
160451798-160450184(+) 160451661-160450173(+) 160451399-160450102(-) 160450214-160451797(-) |
Potential amino acid sequence |
MASYSPSCQPMLRRIRLPTLLSSIALSAVITS*(+) MQNHSSNQIFHPKQIPTVLCHCHRLFEIQSYCSVCHQDCTLLEPNLWHHTVPLANPCCVEYGYP HCFRRLRYQR*(+) MISDSICGKKVVISAPAATIKQNKKTSLPDAVQAAANAALAAEKREKEKAKEIKLASKSSLIAN KKKMNNVLAMWKQRNQEGQAARIVIDDKEPPNSDDRFNHSHSGTGFSSKSKPNFEFENAMDNSV RQGIASTQMLDSDVKPRPVSNSLGTTVMGVIRGSTRGVIKSDTTFHALSDAGSTDSRTTIITRS NGLMTSPVELVTPAPYKTDVSALVSNTSSGVSGSGKRRFSEAPGQSQYRDRAAERRNLYGSSLR TDAVGLDSTGHYPSRKGPSEIGSMPFPPGVGERSNGEIGNNENYEVITADSAIDESNVGNRILR NMGWQEGLYDAIGWAPKEYNPDDKQNSNFESQKDDGSGTAQSGFVWDEKSGYYYDSASGFYYDG TTGLYYDSNSGVWYSYDQQTQQYVPCTDQSNTKAAGETSSENMISDSICGKKVVISAPAATIKQ NKKTSLPDAVQAAANAALAAEKREKEKAKEIKLASKSSLIANKKKMNNVLAMWKQRNQEGQAAR IVIDDKEPPNSDDRFNHSHSGTGFSSKSKPNFEFENAMDNSVRQGIASTQMLDSDVKPRPVSNS LGTTVMGVIRGSTRGVIKSDTTFHALSDAGSTDSRTTIITRSNGLMTSPVELVTPAPYKTDVSA LVSNTSSGVSGSGKRRFSEAPGQSQYRDRAAERRNLYGSSLRTDAVGLDSTGHYPSRKGPSEIG SMPFPPGVGERSNGEIGNNENYEVITADSAIDESNVGNRILRNMGWQEGLYDAIGWAPKEYNPD DKQNSNFESQKDDGSGTAQSGFVWDEKSGYYYDSASGFYYDGTTGLYYDSNSGVWYSYDQQTQQ YVPCTDQSNTKAAGETSSENMISDSICGKKVVISAPAATIKQNKKTSLPDAVQAAANAALAAEK REKEKAKEIKLASKSSLIANKKKMNNVLAMWKQRNQEGQAARIVIDDKEPPNSDDRFNHSHSGT GFSSKSKPNFEFENAMDNSVRQGIASTQMLDSDVKPRPVSNSLGTTVMGVIRGSTRGVIKSDTT FHALSDAGSTDSRTTIITRSNGLMTSPVELVTPAPYKTDVSALVSNTSSGVSGSGKRRFSEAPG QSQYRDRAAERRNLYGSSLRTDAVGLDSTGHYPSRKGPSEIGSMPFPPGVGERSNGEIGNNENY EVITADSAIDESNVGNRILRNMGWQEGLYDAIGWAPKEYNPDDKQNSNFESQKDDGSGTAQSGF VWDEKSGYYYDSASGFYYDGTTGLYYDSNSGVWYSYDQQTQQYVPCTDQSNTKAAGETSSENMI SDSICGKKVVISAPAATIKQNKKTSLPDAVQAAANAALAAEKREKEKAKEIKLASKSSLIANKK KMNNVLAMWKQRNQEGQAARIVIDDKEPPNSDDRFNHSHSGTGFSSKSKPNFEFENAMDNSVRQ GIASTQMLDSDVKPRPVSNSLGTTVMGVIRGSTRGVIKSDTTFHALSDAGSTDSRTTIITRSNG LMTSPVELVTPAPYKTDVSALVSNTSSGVSGSGKRRFSEAPGQSQYRDRAAERRNLYGSSLRTD AVGLDSTGHYPSRKGPSEIGSMPFPPGVGERSNGEIGNNENYEVITADSAIDESNVGNRILRNM GWQEGL(-) MVKLATTKTMKLLPLIAQSTKAMWVTVFYATWVGKRDCMMP*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to drought stress |
Other Information | |
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References | Ma et al., 2021b;Zhang et al., 2019 |