Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Zm00001d011742_circ_g.2 |
| ID in PlantcircBase | zma_circ_009764 |
| Alias | zma_circ_0002883, GRMZM2G151614_C1 |
| Organism | Zea mays |
| Position | chr8: 160450100-160451807 JBrowse» |
| Reference genome | AGPv4.38 |
| Type | u-circRNA |
| Identification method | find_circ, CIRI2 |
| Parent gene | Zm00001d011742 |
| Parent gene annotation |
SUPPRESSOR OF ABI3-5 |
| Parent gene strand | - |
| Alternative splicing | Zm00001d011742_circ_g.1 |
| Support reads | NA |
| Tissues | leaf, root |
| Exon boundary | Yes-Yes |
| Splicing signals | CT-AC |
| Number of exons covered | Zm00001d011742_T048:3 Zm00001d011742_T019:3 Zm00001d011742_T049:2 Zm00001d011742_T047:3 Zm00001d011742_T036:3 Zm00001d011742_T028:3 Zm00001d011742_T016:2 Zm00001d011742_T037:3 Zm00001d011742_T008:2 Zm00001d011742_T011:3 Zm00001d011742_T032:3 Zm00001d011742_T030:3 Zm00001d011742_T045:3 Zm00001d011742_T050:3 Zm00001d011742_T015:2 Zm00001d011742_T006:3 Zm00001d011742_T042:3 Zm00001d011742_T041:3 Zm00001d011742_T022:3 Zm00001d011742_T005:3 Zm00001d011742_T038:3 Zm00001d011742_T001:3 Zm00001d011742_T010:3 Zm00001d011742_T027:3 Zm00001d011742_T034:3 Zm00001d011742_T013:3 Zm00001d011742_T002:3 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.175871546 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
160451798-160450184(+) 160451661-160450173(+) 160451399-160450102(-) 160450214-160451797(-) |
| Potential amino acid sequence |
MASYSPSCQPMLRRIRLPTLLSSIALSAVITS*(+) MQNHSSNQIFHPKQIPTVLCHCHRLFEIQSYCSVCHQDCTLLEPNLWHHTVPLANPCCVEYGYP HCFRRLRYQR*(+) MISDSICGKKVVISAPAATIKQNKKTSLPDAVQAAANAALAAEKREKEKAKEIKLASKSSLIAN KKKMNNVLAMWKQRNQEGQAARIVIDDKEPPNSDDRFNHSHSGTGFSSKSKPNFEFENAMDNSV RQGIASTQMLDSDVKPRPVSNSLGTTVMGVIRGSTRGVIKSDTTFHALSDAGSTDSRTTIITRS NGLMTSPVELVTPAPYKTDVSALVSNTSSGVSGSGKRRFSEAPGQSQYRDRAAERRNLYGSSLR TDAVGLDSTGHYPSRKGPSEIGSMPFPPGVGERSNGEIGNNENYEVITADSAIDESNVGNRILR NMGWQEGLYDAIGWAPKEYNPDDKQNSNFESQKDDGSGTAQSGFVWDEKSGYYYDSASGFYYDG TTGLYYDSNSGVWYSYDQQTQQYVPCTDQSNTKAAGETSSENMISDSICGKKVVISAPAATIKQ NKKTSLPDAVQAAANAALAAEKREKEKAKEIKLASKSSLIANKKKMNNVLAMWKQRNQEGQAAR IVIDDKEPPNSDDRFNHSHSGTGFSSKSKPNFEFENAMDNSVRQGIASTQMLDSDVKPRPVSNS LGTTVMGVIRGSTRGVIKSDTTFHALSDAGSTDSRTTIITRSNGLMTSPVELVTPAPYKTDVSA LVSNTSSGVSGSGKRRFSEAPGQSQYRDRAAERRNLYGSSLRTDAVGLDSTGHYPSRKGPSEIG SMPFPPGVGERSNGEIGNNENYEVITADSAIDESNVGNRILRNMGWQEGLYDAIGWAPKEYNPD DKQNSNFESQKDDGSGTAQSGFVWDEKSGYYYDSASGFYYDGTTGLYYDSNSGVWYSYDQQTQQ YVPCTDQSNTKAAGETSSENMISDSICGKKVVISAPAATIKQNKKTSLPDAVQAAANAALAAEK REKEKAKEIKLASKSSLIANKKKMNNVLAMWKQRNQEGQAARIVIDDKEPPNSDDRFNHSHSGT GFSSKSKPNFEFENAMDNSVRQGIASTQMLDSDVKPRPVSNSLGTTVMGVIRGSTRGVIKSDTT FHALSDAGSTDSRTTIITRSNGLMTSPVELVTPAPYKTDVSALVSNTSSGVSGSGKRRFSEAPG QSQYRDRAAERRNLYGSSLRTDAVGLDSTGHYPSRKGPSEIGSMPFPPGVGERSNGEIGNNENY EVITADSAIDESNVGNRILRNMGWQEGLYDAIGWAPKEYNPDDKQNSNFESQKDDGSGTAQSGF VWDEKSGYYYDSASGFYYDGTTGLYYDSNSGVWYSYDQQTQQYVPCTDQSNTKAAGETSSENMI SDSICGKKVVISAPAATIKQNKKTSLPDAVQAAANAALAAEKREKEKAKEIKLASKSSLIANKK KMNNVLAMWKQRNQEGQAARIVIDDKEPPNSDDRFNHSHSGTGFSSKSKPNFEFENAMDNSVRQ GIASTQMLDSDVKPRPVSNSLGTTVMGVIRGSTRGVIKSDTTFHALSDAGSTDSRTTIITRSNG LMTSPVELVTPAPYKTDVSALVSNTSSGVSGSGKRRFSEAPGQSQYRDRAAERRNLYGSSLRTD AVGLDSTGHYPSRKGPSEIGSMPFPPGVGERSNGEIGNNENYEVITADSAIDESNVGNRILRNM GWQEGL(-) MVKLATTKTMKLLPLIAQSTKAMWVTVFYATWVGKRDCMMP*(-) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | responsive to drought stress |
| Other Information | |
|---|---|
| References | Ma et al., 2021b;Zhang et al., 2019 |