Plant Circular RNA Database

Detail information of AT1G32490_circ_g.5

			
						 General Information
					
						CircRNA Name
						AT1G32490_circ_g.5
					
						ID in PlantcircBase
						ath_circ_005426
					
						Alias
						NA
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr1: 11745306-11748518  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer, PcircRNA_finder
					
						Parent gene
						
							AT1G32490						
					
						Parent gene annotation
						
							ESP3
							
						Parent gene strand
						-
					
						Alternative splicing
						
							AT1G32490_circ_g.2 AT1G32490_circ_g.3 AT1G32490_circ_g.4 AT1G32490_circ_g.6 AT1G32490_circ_g.7 AT1G32490_circ_g.8 AT1G32490_circ_g.9 AT1G32490_circ_g.10 AT1G32490_circ_g.11 AT1G32490_circ_g.12 AT1G32490_circ_g.13 						
					
						Support reads
						1
					
						Tissues
						inflorescences
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT1G32490.1:14
AT1G32490.2:14

General Information
CircRNA Name	AT1G32490_circ_g.5
ID in PlantcircBase	ath_circ_005426
Alias	NA
Organism	Arabidpsis thaliana
Position	chr1: 11745306-11748518 JBrowse»
Reference genome	TAIR10.38
Type	e-circRNA
Identification method	CIRCexplorer, PcircRNA_finder
Parent gene	AT1G32490
Parent gene annotation	ESP3
Parent gene strand	-
Alternative splicing	AT1G32490_circ_g.2 AT1G32490_circ_g.3 AT1G32490_circ_g.4 AT1G32490_circ_g.6 AT1G32490_circ_g.7 AT1G32490_circ_g.8 AT1G32490_circ_g.9 AT1G32490_circ_g.10 AT1G32490_circ_g.11 AT1G32490_circ_g.12 AT1G32490_circ_g.13
Support reads	1
Tissues	inflorescences
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT1G32490.1:14 AT1G32490.2:14

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							AAATAGTTGAAATGCGTTGAGAGTCCAGATATACCTCAGAACCATCATCCTCTTCAGAAACCTT
TCTTCTAACGTGTCTACTATCCTCTCTAACGGCCACctttccacgctttgtgtaaccagcttca
tggagatattgtggtatttgtgtcgtttttcctgaaccagtgtctcccacaatgacaagaacct
aatatatt

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CTTTCCACGCTTTGTGTAACCAGCTTCATGGAGATATTGTGGTATTTGTGTCGTTTTTCCTGAA
CCAGTGTCTCCCACAATGACAAGAACCTAATATATTAAAAAAAGTTGAAAGAAAAAGGTTTCAA
ATTTCAATTGCATGTAGCAGAGAAAGCCATATAGTGAAAAACAAAAACGTTATGCACAATTTCA
TAATCAAACATTTCAATCTAAATCTTCATTTGTACAAAACACTGAAATTTGATACGTTCCTTTA
CTCAAAAATGATTCCTTCTCTATCGATCTTGAATCAGTTACACATACTCAAATGTTATAACCGG
AAAATACTGTTTTCGATAGGGATTGGTGAAGTATGCTTCTCGTTTGTTATTAGATGATATCAAA
AATGGCATGAAAGCTTGAATTACCTGATGCTCTTCCACAGCCTTAAGCAGTTGATCACGATACG
TATAAATCGGCAGACTTCTTCTGACTTCCTGATTCACAAATAAACAGATGCAAGAACATGTCAA
GATAAATTTTAGTTTTTGCTACGGATATAAATTCAAAGAAACATACAAGCTTAACTTATCTTGA
ATTACATCCTAAAAAGAAGATCTGGTGGTTGAGTTTGATCAAACAGAGTTAATGAGAAAAAATA
GAAAAAGGATAGTACCTGAAGTTCCTCTAAAGCTGTTTTCTCTGCCAAATCTTGAGATTTTTGT
TTTGCATCCATAGCATCTTCATACTGCAGTACAAAACAAGCAATCAGCTAAAACTCAACATATG
AAAGAAGGTATCATCAGGTTTAATAGACATCATAGGCAATAATACATTTTCACCAGCCATGACA
GATTCCTTTATGAAGTTTATTTGGTCTTCAAACACAAACCTGCGAAAAACATGTTTAAGATTTA
GAATCCCCAGATCATGGGACTATCCATGTTTAAGAGCTGGCAAGGACTATTTCTCAAACGAGAT
AAACAAATTCGAAATCAGTAGAATAAGAATAAAAGAACAATATGCAACAGATCTTACTGATAAT
CGTCTGAGGCTTGCTTATTCTTTGCACCAAATTTTAATGTTGCTTTTCCTGCATTACAATGTCA
TTTAAATTAGCATACAAGTAAACAAAGTCACTTAAATCAGTGGATAGTTAAAAAATGACTGGTT
AACAGAAAAGAGTTAAAACAGAAATTACCAATCTGATGGTCCTCCCAAGCTTCTTGCTCTGCGA
ATGGATTCATTTTCTCTGTTGAATCCAGGTCCCTAATATAAAAAATATGATTTAGGACGTCCGA
AAGAATTTTGTAAAATAAGAAAGATAGATATTCCTATTGTAAGTGCAAGCAGAGAAGAATGTGG
TGGATCACTAGCAAATCGCTCGTTGTCGACTCACCTGTATCGTTGAACAGCAACAGAAAACCTC
TTCTCCTGATCAACACCTCCCTCTTGATCATAAGCATCTGGAATTCTATACTGAACTCCGAGAG
GTAGGAGTAAAAGGGAGAGGCGTTAGATATATAGATATTCTACATAACCAAGTGGGAGAAGGGT
CCAGCAAGATGAAAACGTTACCTCCTCGACGTTATCTTCATCTTGTGTTCTTTTCTTCACGAGG
TCATAAAGCTCTTTCTTGTACCTATCAAAGATAACAGATCAACCCAAGCTCAATCAACTATAAC
TAAACATACTTTCTTAAATATGAATACAACCATCTAACTTTTCAATTGCAAAAATAAATTTTTT
AAAAATGCACTATTCATATACAATTGAAAATGTTTATTCCTCATCAAAAGAAGCATGCTGCATC
AAATAGATGTTGGCAATGGCAACAACCACCTTGATACAAGAAAGATGTAACAATTACCTAAACT
CACGAAGCTCCGTTTCTGTGAGCTTTTCACCTCCGAAAAGATATTGTTCATCTTCTATCTCATC
CCTATGGAGAAAAGAATAAAAATGGGAGAAATCAATTATAGAAGATAGATCCATAAAAGATAGA
AAACTGCAAAAATCTTTATGTCATGTACCTTAGTTCATCCAGTTTCTTTTGTTCTCTCTTCTTT
AAGTATTCTTGTCTCGAGACTTTCCTGTATCAGACCCACCAAAAGATGATCAATAACATGGACA
GCACAAAATAGCCTCCAAAGAGATTATTTCAACAAGTAAGAACACCCTCAAGAGTACTTAACAA
GGAGATGATTGACATAGTCAAAAATTGGTAACTGGAACATCATATAGTATTTTAACGGTGGGAT
TTTAACATACAACACCCAGGTACATTATTGACTACTGTTCTTGTAAATCATGCTAGGTAACTAA
ACTTAATTACCTAAAATCACTGTTAAAAAGCGATCATCACAAACAAATAAAGAAGGAAAAGGTT
CATTACCTTAAGGAATATAAATCATCCTTCTCCAAAGCATTTGCTCTTCGAACAGCCTCTTCTG
TTTTGCAATAAAACATAAAACCAAAATGAGAATATCAGGCAAAAAATACTTATGTCTAGATCAC
AATGTATCATAGAAATGTTCATATATGTTCATGCGCAAATTATAACAGAGTGTACCTTTCTCTT
TCTTTGACAACGTTTGCTCTGTTAGCTGATCAATAAACAAACGAAAATAACATGTCATTGACTT
TCACATGTACAATACATTGATAAGTAAACCATGCTAACTATATACTTCTTGTTTGGTTAGTGAA
TTTGTCTTAGCATACAAGATTGGATGACGAATAAATGTGAATATTTTTGCTTAATTCATCTTCC
ATACTCAAACAAAGCTAGATTTGCCTGCTATGAATTACGAGAAAACTCATTCATTAATAACTTG
TACATAAATTGCCGACAATACTTACCCCCGGTTTGCTACAAACACACGACCTATTCAGAGCACA
AAACAGGAAAAATATACCAAGATTAGATTGAGGCATACCTTTCGTGTCCGTGCAGTATCACGAT
CTTTTAAATGCTGCTCCAGTTCTTCTCTCTCCTTTTGGTCACGCACTCTTTCCTCTTCTGACTG
TGCGAGTGGACAAGAAAGAAGAACATTATAAAAGCACACGTGAATGCACATATATCTATAGAAC
ATCTCCCAGTTATTGGAGTAAACCAAAGACCAGGAATCAGAAAATAGTTGAAATGCGTTGAGAG
TCCAGATATACCTCAGAACCATCATCCTCTTCAGAAACCTTTCTTCTAACGTGTCTACTATCCT
CTCTAACGGCCAC
						
					

			
		

Sequences
Splice junction sequence	AAATAGTTGAAATGCGTTGAGAGTCCAGATATACCTCAGAACCATCATCCTCTTCAGAAACCTT TCTTCTAACGTGTCTACTATCCTCTCTAACGGCCACctttccacgctttgtgtaaccagcttca tggagatattgtggtatttgtgtcgtttttcctgaaccagtgtctcccacaatgacaagaacct aatatatt
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CTTTCCACGCTTTGTGTAACCAGCTTCATGGAGATATTGTGGTATTTGTGTCGTTTTTCCTGAA CCAGTGTCTCCCACAATGACAAGAACCTAATATATTAAAAAAAGTTGAAAGAAAAAGGTTTCAA ATTTCAATTGCATGTAGCAGAGAAAGCCATATAGTGAAAAACAAAAACGTTATGCACAATTTCA TAATCAAACATTTCAATCTAAATCTTCATTTGTACAAAACACTGAAATTTGATACGTTCCTTTA CTCAAAAATGATTCCTTCTCTATCGATCTTGAATCAGTTACACATACTCAAATGTTATAACCGG AAAATACTGTTTTCGATAGGGATTGGTGAAGTATGCTTCTCGTTTGTTATTAGATGATATCAAA AATGGCATGAAAGCTTGAATTACCTGATGCTCTTCCACAGCCTTAAGCAGTTGATCACGATACG TATAAATCGGCAGACTTCTTCTGACTTCCTGATTCACAAATAAACAGATGCAAGAACATGTCAA GATAAATTTTAGTTTTTGCTACGGATATAAATTCAAAGAAACATACAAGCTTAACTTATCTTGA ATTACATCCTAAAAAGAAGATCTGGTGGTTGAGTTTGATCAAACAGAGTTAATGAGAAAAAATA GAAAAAGGATAGTACCTGAAGTTCCTCTAAAGCTGTTTTCTCTGCCAAATCTTGAGATTTTTGT TTTGCATCCATAGCATCTTCATACTGCAGTACAAAACAAGCAATCAGCTAAAACTCAACATATG AAAGAAGGTATCATCAGGTTTAATAGACATCATAGGCAATAATACATTTTCACCAGCCATGACA GATTCCTTTATGAAGTTTATTTGGTCTTCAAACACAAACCTGCGAAAAACATGTTTAAGATTTA GAATCCCCAGATCATGGGACTATCCATGTTTAAGAGCTGGCAAGGACTATTTCTCAAACGAGAT AAACAAATTCGAAATCAGTAGAATAAGAATAAAAGAACAATATGCAACAGATCTTACTGATAAT CGTCTGAGGCTTGCTTATTCTTTGCACCAAATTTTAATGTTGCTTTTCCTGCATTACAATGTCA TTTAAATTAGCATACAAGTAAACAAAGTCACTTAAATCAGTGGATAGTTAAAAAATGACTGGTT AACAGAAAAGAGTTAAAACAGAAATTACCAATCTGATGGTCCTCCCAAGCTTCTTGCTCTGCGA ATGGATTCATTTTCTCTGTTGAATCCAGGTCCCTAATATAAAAAATATGATTTAGGACGTCCGA AAGAATTTTGTAAAATAAGAAAGATAGATATTCCTATTGTAAGTGCAAGCAGAGAAGAATGTGG TGGATCACTAGCAAATCGCTCGTTGTCGACTCACCTGTATCGTTGAACAGCAACAGAAAACCTC TTCTCCTGATCAACACCTCCCTCTTGATCATAAGCATCTGGAATTCTATACTGAACTCCGAGAG GTAGGAGTAAAAGGGAGAGGCGTTAGATATATAGATATTCTACATAACCAAGTGGGAGAAGGGT CCAGCAAGATGAAAACGTTACCTCCTCGACGTTATCTTCATCTTGTGTTCTTTTCTTCACGAGG TCATAAAGCTCTTTCTTGTACCTATCAAAGATAACAGATCAACCCAAGCTCAATCAACTATAAC TAAACATACTTTCTTAAATATGAATACAACCATCTAACTTTTCAATTGCAAAAATAAATTTTTT AAAAATGCACTATTCATATACAATTGAAAATGTTTATTCCTCATCAAAAGAAGCATGCTGCATC AAATAGATGTTGGCAATGGCAACAACCACCTTGATACAAGAAAGATGTAACAATTACCTAAACT CACGAAGCTCCGTTTCTGTGAGCTTTTCACCTCCGAAAAGATATTGTTCATCTTCTATCTCATC CCTATGGAGAAAAGAATAAAAATGGGAGAAATCAATTATAGAAGATAGATCCATAAAAGATAGA AAACTGCAAAAATCTTTATGTCATGTACCTTAGTTCATCCAGTTTCTTTTGTTCTCTCTTCTTT AAGTATTCTTGTCTCGAGACTTTCCTGTATCAGACCCACCAAAAGATGATCAATAACATGGACA GCACAAAATAGCCTCCAAAGAGATTATTTCAACAAGTAAGAACACCCTCAAGAGTACTTAACAA GGAGATGATTGACATAGTCAAAAATTGGTAACTGGAACATCATATAGTATTTTAACGGTGGGAT TTTAACATACAACACCCAGGTACATTATTGACTACTGTTCTTGTAAATCATGCTAGGTAACTAA ACTTAATTACCTAAAATCACTGTTAAAAAGCGATCATCACAAACAAATAAAGAAGGAAAAGGTT CATTACCTTAAGGAATATAAATCATCCTTCTCCAAAGCATTTGCTCTTCGAACAGCCTCTTCTG TTTTGCAATAAAACATAAAACCAAAATGAGAATATCAGGCAAAAAATACTTATGTCTAGATCAC AATGTATCATAGAAATGTTCATATATGTTCATGCGCAAATTATAACAGAGTGTACCTTTCTCTT TCTTTGACAACGTTTGCTCTGTTAGCTGATCAATAAACAAACGAAAATAACATGTCATTGACTT TCACATGTACAATACATTGATAAGTAAACCATGCTAACTATATACTTCTTGTTTGGTTAGTGAA TTTGTCTTAGCATACAAGATTGGATGACGAATAAATGTGAATATTTTTGCTTAATTCATCTTCC ATACTCAAACAAAGCTAGATTTGCCTGCTATGAATTACGAGAAAACTCATTCATTAATAACTTG TACATAAATTGCCGACAATACTTACCCCCGGTTTGCTACAAACACACGACCTATTCAGAGCACA AAACAGGAAAAATATACCAAGATTAGATTGAGGCATACCTTTCGTGTCCGTGCAGTATCACGAT CTTTTAAATGCTGCTCCAGTTCTTCTCTCTCCTTTTGGTCACGCACTCTTTCCTCTTCTGACTG TGCGAGTGGACAAGAAAGAAGAACATTATAAAAGCACACGTGAATGCACATATATCTATAGAAC ATCTCCCAGTTATTGGAGTAAACCAAAGACCAGGAATCAGAAAATAGTTGAAATGCGTTGAGAG TCCAGATATACCTCAGAACCATCATCCTCTTCAGAAACCTTTCTTCTAACGTGTCTACTATCCT CTCTAACGGCCAC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.129302402

Conservation Information
Conserved circRNAs	NA
PMCS	0.129302402

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							11746532-11745308(-)
						
						Potential amino acid sequence
						
							MNPFAEQEAWEDHQIGKATLKFGAKNKQASDDYQFVFEDQINFIKESVMAGENYEDAMDAKQKS
QDLAEKTALEELQEVRRSLPIYTYRDQLLKAVEEHQVLVIVGDTGSGKTTQIPQYLHEAGYTKR
GKVAVREDSRHVRRKVSEEDDGSESEEERVRDQKEREELEQHLKDRDTARTRKLTEQTLSKKEK
EEAVRRANALEKDDLYSLRKVSRQEYLKKREQKKLDELRDEIEDEQYLFGGEKLTETELREFRY
KKELYDLVKKRTQDEDNVEEYRIPDAYDQEGGVDQEKRFSVAVQRYRDLDSTEKMNPFAEQEAW
EDHQIGKATLKFGAKNKQASDDYQFVFEDQINFIKESVMAGENYEDAMDAKQKSQDLAEKTALE
ELQEVRRSLPIYTYRDQLLKAVEEHQVLVIVGDTGSGKTTQIPQYLHEAGYTKRGKVAVREDSR
HVRRKVSEEDDGSESEEERVRDQKEREELEQHLKDRDTARTRKLTEQTLSKKEKEEAVRRANAL
EKDDLYSLRKVSRQEYLKKREQKKLDELRDEIEDEQYLFGGEKLTETELREFRYKKELYDLVKK
RTQDEDNVEEYRIPDAYDQEGGVDQEKRFSVAVQRYRDLDSTEKMNPFAEQEAWEDHQIGKATL
KFGAKNKQASDDYQFVFEDQINFIKESVMAGENYEDAMDAKQKSQDLAEKTALEELQEVRRSLP
IYTYRDQLLKAVEEHQVLVIVGDTGSGKTTQIPQYLHEAGYTKRGKVAVREDSRHVRRKVSEED
DGSESEEERVRDQKEREELEQHLKDRDTARTRKLTEQTLSKKEKEEAVRRANALEKDDLYSLRK
VSRQEYLKKREQKKLDELRDEIEDEQYLFGGEKLTETELREFRYKKELYDLVKKRTQDEDNVEE
YRIPDAYDQEGGVDQEKRFSVAVQRYRDLDSTEKMNPFAEQEAWEDHQIGKATLKFGAKNKQAS
DDYQFVFEDQINFIKESVMAGENYEDAMDAKQKSQDLAEKTALEELQEVRRSLPIYTYRDQLLK
AVEEHQVLVIVGDTGSGKTTQIPQYLHEAGYTKRGK(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	11746532-11745308(-)
Potential amino acid sequence	MNPFAEQEAWEDHQIGKATLKFGAKNKQASDDYQFVFEDQINFIKESVMAGENYEDAMDAKQKS QDLAEKTALEELQEVRRSLPIYTYRDQLLKAVEEHQVLVIVGDTGSGKTTQIPQYLHEAGYTKR GKVAVREDSRHVRRKVSEEDDGSESEEERVRDQKEREELEQHLKDRDTARTRKLTEQTLSKKEK EEAVRRANALEKDDLYSLRKVSRQEYLKKREQKKLDELRDEIEDEQYLFGGEKLTETELREFRY KKELYDLVKKRTQDEDNVEEYRIPDAYDQEGGVDQEKRFSVAVQRYRDLDSTEKMNPFAEQEAW EDHQIGKATLKFGAKNKQASDDYQFVFEDQINFIKESVMAGENYEDAMDAKQKSQDLAEKTALE ELQEVRRSLPIYTYRDQLLKAVEEHQVLVIVGDTGSGKTTQIPQYLHEAGYTKRGKVAVREDSR HVRRKVSEEDDGSESEEERVRDQKEREELEQHLKDRDTARTRKLTEQTLSKKEKEEAVRRANAL EKDDLYSLRKVSRQEYLKKREQKKLDELRDEIEDEQYLFGGEKLTETELREFRYKKELYDLVKK RTQDEDNVEEYRIPDAYDQEGGVDQEKRFSVAVQRYRDLDSTEKMNPFAEQEAWEDHQIGKATL KFGAKNKQASDDYQFVFEDQINFIKESVMAGENYEDAMDAKQKSQDLAEKTALEELQEVRRSLP IYTYRDQLLKAVEEHQVLVIVGDTGSGKTTQIPQYLHEAGYTKRGKVAVREDSRHVRRKVSEED DGSESEEERVRDQKEREELEQHLKDRDTARTRKLTEQTLSKKEKEEAVRRANALEKDDLYSLRK VSRQEYLKKREQKKLDELRDEIEDEQYLFGGEKLTETELREFRYKKELYDLVKKRTQDEDNVEE YRIPDAYDQEGGVDQEKRFSVAVQRYRDLDSTEKMNPFAEQEAWEDHQIGKATLKFGAKNKQAS DDYQFVFEDQINFIKESVMAGENYEDAMDAKQKSQDLAEKTALEELQEVRRSLPIYTYRDQLLK AVEEHQVLVIVGDTGSGKTTQIPQYLHEAGYTKRGK(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of AT1G32490_circ_g.5

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