Plant Circular RNA Database

Detail information of AT4G02020_circ_g.2

			
						 General Information
					
						CircRNA Name
						AT4G02020_circ_g.2
					
						ID in PlantcircBase
						ath_circ_029289
					
						Alias
						NA
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr4: 886980-891155  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						CIRCexplorer, CIRI
					
						Parent gene
						
							AT4G02020						
					
						Parent gene annotation
						
							Histone-lysine N-methyltransferase EZA1
							
						Parent gene strand
						+
					
						Alternative splicing
						
							AT4G02020_circ_g.1 AT4G02020_circ_g.3 AT4G02020_circ_g.4 AT4G02020_circ_g.5 AT4G02020_circ_g.6 AT4G02020_circ_g.7 AT4G02020_circ_g.8 AT4G02020_circ_g.9 AT4G02020_circ_g.10 						
					
						Support reads
						2
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT4G02020.4:15
AT4G02020.2:14
AT4G02020.1:15
AT4G02020.3:14

General Information
CircRNA Name	AT4G02020_circ_g.2
ID in PlantcircBase	ath_circ_029289
Alias	NA
Organism	Arabidpsis thaliana
Position	chr4: 886980-891155 JBrowse»
Reference genome	TAIR10.38
Type	ue-circRNA
Identification method	CIRCexplorer, CIRI
Parent gene	AT4G02020
Parent gene annotation	Histone-lysine N-methyltransferase EZA1
Parent gene strand	+
Alternative splicing	AT4G02020_circ_g.1 AT4G02020_circ_g.3 AT4G02020_circ_g.4 AT4G02020_circ_g.5 AT4G02020_circ_g.6 AT4G02020_circ_g.7 AT4G02020_circ_g.8 AT4G02020_circ_g.9 AT4G02020_circ_g.10
Support reads	2
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT4G02020.4:15 AT4G02020.2:14 AT4G02020.1:15 AT4G02020.3:14

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							AGTAAGCTTTTGATATTTGCAGTACGTCCTCGATGCTCAACGCAAAGGTGACAAGCTGAAATTT
GCCAATCACTCAGCTAAACCCAATTGCTACGCTAAGaagtctcatgtagatgatgatgatgatg
gtgaagaagaagaagatagactcgagggtttggaaaacagattaagtgagcttaaaaggaaaat
tcaaggag

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 2343
Transcript exons: 886980-887099,887200-887465,887606-887764,888018-888102,
888206-888349,888438-888485,888570-888641,888885-889489,
889579-889726,890048-890268,890340-890471,890565-890652,
890743-890790,890870-890998,891078-891155
AAGTCTCATGTAGATGATGATGATGATGGTGAAGAAGAAGAAGATAGACTCGAGGGTTTGGAAA
ACAGATTAAGTGAGCTTAAAAGGAAAATTCAAGGAGAAAGAGTTAGGTCTATTAAAGAGAAATT
TGAGGCTAATAGAAAGAAAGTGGATGCTCATGTTTCTCCCTTTTCATCTGCTGCATCGAGCCGA
GCTACCGCAGAGGATAATGGAAATAGCAATATGCTTTCTTCGAGAATGAGAATGCCACTCTGCA
AGTTAAATGGTTTTTCTCATGGTGTGGGAGATAGAGACTATGTTCCTACTAAGGATGTTATATC
AGCAAGTGTCAAGCTTCCTATTGCTGAGAGAATACCGCCATACACTACCTGGATATTTTTGGAC
AGAAATCAAAGAATGGCTGAAGATCAGTCTGTGGTTGGTCGAAGACAAATCTACTATGAACAAC
ATGGTGGTGAGACGCTAATATGCAGCGATAGTGAGGAAGAACCAGAACCTGAGGAGGAAAAACG
TGAATTTTCCGAGGGTGAAGATTCCATTATATGGTTAATTGGGCAGGAGTATGGCATGGGTGAG
GAAGTGCAGGATGCCCTTTGCCAGTTGCTAAGCGTAGATGCTTCTGATATCCTGGAAAGATACA
ATGAGCTCAAGTTGAAGGATAAGCAGAATACCGAGGAATTTTCTAATTCCGGATTCAAGCTGGG
AATATCTCTGGAAAAGGGCCTTGGTGCAGCTCTAGATTCTTTTGATAATCTTTTCTGCCGCCGT
TGCTTGGTATTTGACTGTCGTCTGCATGGATGTTCTCAGCCTTTGATTAGTGCTAGTGAAAAAC
AGCCTTATTGGTCTGATTATGAAGGTGATAGGAAACCCTGCAGCAAACATTGTTACCTCCAGCT
CAAGGCGGTCAGAGAAGTACCAGAAACATGCAGTAATTTTGCATCTAAAGCAGAAGAGAAAGCT
TCAGAAGAGGAATGCAGCAAGGCTGTCTCCTCTGATGTTCCCCATGCTGCTGCTAGTGGTGTCA
GTCTGCAAGTTGAGAAGACTGATATTGGTATCAAGAATGTAGATTCATCCTCTGGTGTAGAACA
AGAGCATGGAATTAGAGGAAAGCGTGAGGTCCCAATTCTAAAAGACTCCAATGATCTGCCTAAT
TTATCGAACAAGAAACAGAAGACCGCAGCCTCAGATACAAAAATGTCATTTGTTAATTCTGTCC
CTAGCTTAGATCAGGCATTGGATAGCACAAAGGGTGATCAAGGTGGAACAACTGACAATAAAGT
AAACAGAGACTCAGAAGCTGATGCAAAAGAAGTAGGTGAGCCTATTCCAGACAATTCGGTCCAT
GATGGTGGTTCCTCAATTTGTCAGCCACACCATGGTAGTGGAAACGGAGCAATAATCATTGCAG
AAATGTCTGAGACAAGTCGACCATCTACAGAGTGGAATCCTATCGAGAAGGATCTTTACTTGAA
GGGAGTCGAAATCTTTGGAAGAAACAGCTGTCTTATTGCAAGAAACCTGCTTTCTGGCTTGAAG
ACATGCCTAGATGTGTCCAATTACATGCGTGAAAACGAAGTTTCAGTTTTTCGAAGATCTAGTA
CCCCAAATTTGCTGTTGGATGATGGCAGGACTGACCCAGGGAATGATAATGATGAGGTGCCTCC
AAGGACAAGATTGTTCCGTAGAAAAGGCAAAACCCGGAAGCTAAAATACTCTACAAAGTCTGCT
GGTCATCCGTCTGTCTGGAAAAGAATAGCTGGTGGCAAAAACCAGTCCTGTAAACAATACACGC
CGTGTGGATGCCTGTCAATGTGCGGAAAGGATTGCCCTTGTCTAACTAATGAAACTTGCTGCGA
GAAATATTGCGGGTGCTCAAAAAGCTGTAAAAATCGTTTCCGAGGATGTCATTGTGCAAAGAGT
CAATGCAGAAGTAGGCAGTGTCCCTGCTTTGCTGCTGGCAGAGAATGTGATCCAGATGTTTGCA
GAAATTGCTGGGTTAGTTGTGGAGATGGTTCTCTCGGTGAAGCACCAAGACGCGGAGAAGGGCA
ATGCGGAAACATGAGACTTCTCCTGAGGCAACAACAGAGGATCCTATTGGGAAAGTCTGATGTT
GCTGGATGGGGTGCTTTTCTAAAGAACTCGGTCAGCAAAAATGAATACCTTGGAGAATACACCG
GTGAATTGATCTCACACCATGAGGCGGATAAGCGTGGGAAAATATATGACCGGGCAAATTCGTC
CTTCCTCTTTGACTTGAATGATCAGTACGTCCTCGATGCTCAACGCAAAGGTGACAAGCTGAAA
TTTGCCAATCACTCAGCTAAACCCAATTGCTACGCTAAG
						
					

						Genomic sequence
						
							AAGTCTCATGTAGATGATGATGATGATGGTGAAGAAGAAGAAGATAGACTCGAGGGTTTGGAAA
ACAGATTAAGTGAGCTTAAAAGGAAAATTCAAGGAGAAAGAGTTAGGTCTATTAAAGTAAGAGA
GTTTCTATACTTGATGTTCTTTACTAATTATACTAATGTCTAAAAAATTTGAAATCATTTATCC
GTTTTTGATTGTTTTCCTGGGAATGTAGGAGAAATTTGAGGCTAATAGAAAGAAAGTGGATGCT
CATGTTTCTCCCTTTTCATCTGCTGCATCGAGCCGAGCTACCGCAGAGGATAATGGAAATAGCA
ATATGCTTTCTTCGAGAATGAGAATGCCACTCTGCAAGTTAAATGGTTTTTCTCATGGTGTGGG
AGATAGAGACTATGTTCCTACTAAGGATGTTATATCAGCAAGTGTCAAGCTTCCTATTGCTGAG
AGAATACCGCCATACACTACCTGGATATTTTTGGACAGGCATGCACCTTTTCTAGTTCTCATTT
TTGCGTTGGTAGCATGCTATTCTAAATTCAGTTGAACAATAGACTAGAACATCAAATTCAGTTT
TCATATTATGTGTTGTTTTTCTTTTCTGAAAAAATATCTTAACCATGCAGAAATCAAAGAATGG
CTGAAGATCAGTCTGTGGTTGGTCGAAGACAAATCTACTATGAACAACATGGTGGTGAGACGCT
AATATGCAGCGATAGTGAGGAAGAACCAGAACCTGAGGAGGAAAAACGTGAATTTTCCGAGGGT
GAAGATTCCATTATATGGTTAGTTTTGCAGAGAGTGTAAATTATGGACTCTCATGTACTCTGAT
GGGGAAAAATTGTGATACTGGTATTTGAAGAAGTACCTGGGTGGAATTTATTAACCAATGAATC
ACATTTGTTGATGCTAAAAAAAGATGTCATATTTCGTATTCATATCAAATTTCATTCTGTAAGA
CTCTTCATTAGCATTAGGTTTGAAATATATCTCACTATATATGAATTTCTTCATACCTCGTTTG
ACTTGAATTGGCAGGTTAATTGGGCAGGAGTATGGCATGGGTGAGGAAGTGCAGGATGCCCTTT
GCCAGTTGCTAAGCGTAGATGCTTCTGATATCCTGGTGCAGTTTTTAGTCATCTTGTTCTTGTG
GTTTATCTAATGATGTTTTTCTGGTCTTCCTATTCTTCTTCACTAATGATGTTTGGCTTTCCTG
TCTGCTGCAGGAAAGATACAATGAGCTCAAGTTGAAGGATAAGCAGAATACCGAGGAATTTTCT
AATTCCGGATTCAAGCTGGGAATATCTCTGGAAAAGGGCCTTGGTGCAGCTCTAGATTCTTTTG
ATAATCTTTTCTGCCGCCGTTGCTTGGTACTTGGATTGTTCTTTGTGACAGAGAGAGCATGTAT
TATTAAGTGTTTGTTAATCATGTTAATCCTTCTTTGGTTATTTCTAACAGGTATTTGACTGTCG
TCTGCATGGATGTTCTCAGCCTTTGATTAGTGCTGTAAGCTTGAATTTGTCTTTACTTTCTTTA
GTTGTATTGCTAAAGTTTCAGTGGACAACATAACAAGAGAACTTTGGTTGACAGAGTGAAAAAC
AGCCTTATTGGTCTGATTATGAAGGTGATAGGAAACCCTGCAGCAAACATTGTTACCTCCAGGT
CTATCTCTCTCTCTGTCTCTTTACATTCTCAGAGTGATTTGTATATTCGTAGTTAATAAACTAT
ATTCATTAGTGAGATCATGGAATATATGCTCTGACCTAGATTGAGGTTTAGCATGTATGCGTTT
GCTAGAGGAGTGATCTTTCATTGTAGTTGTACTAGTGCATAGTCTTGTTTATGCAGTAATTTTT
CTTGGTTCCAGAGTTTGAATCACCATTATTCTTATGTTAATGATTTTAGCTCAAGGCGGTCAGA
GAAGTACCAGAAACATGCAGTAATTTTGCATCTAAAGCAGAAGAGAAAGCTTCAGAAGAGGAAT
GCAGCAAGGCTGTCTCCTCTGATGTTCCCCATGCTGCTGCTAGTGGTGTCAGTCTGCAAGTTGA
GAAGACTGATATTGGTATCAAGAATGTAGATTCATCCTCTGGTGTAGAACAAGAGCATGGAATT
AGAGGAAAGCGTGAGGTCCCAATTCTAAAAGACTCCAATGATCTGCCTAATTTATCGAACAAGA
AACAGAAGACCGCAGCCTCAGATACAAAAATGTCATTTGTTAATTCTGTCCCTAGCTTAGATCA
GGCATTGGATAGCACAAAGGGTGATCAAGGTGGAACAACTGACAATAAAGTAAACAGAGACTCA
GAAGCTGATGCAAAAGAAGTAGGTGAGCCTATTCCAGACAATTCGGTCCATGATGGTGGTTCCT
CAATTTGTCAGCCACACCATGGTAGTGGAAACGGAGCAATAATCATTGCAGAAATGTCTGAGAC
AAGTCGACCATCTACAGAGTGGAATCCTATCGAGAAGGATCTTTACTTGAAGGGAGTCGAAATC
TTTGGAAGAAACAGGTAAACTGGATCTTGGTAAATTATTATCTTTAAACACAGAACACCTATAA
CGTATTTACATCTAGTATGTTTTGTCCGTGCTATCTCAGCTGTCTTATTGCAAGAAACCTGCTT
TCTGGCTTGAAGACATGCCTAGATGTGTCCAATTACATGCGTGAAAACGAAGTTTCAGTTTTTC
GAAGATCTAGTACCCCAAATTTGCTGTTGGATGATGGCAGGACTGACCCAGGGAATGATGTAAG
CTCTTGATCTTCCTAGGGTCTTTTGTCTTTTCAAATTTTCTGCAGTATCTGCGACTTTGGGCAT
TGTTGTATTGAAAGTTAGCTTGTCAGACTGATAGGGTTAGAGATCTATTCCAGAAGAAAAAAGT
TCTGATCCGGAAAAGCCAATTTCCTTGCTTAATTTTTCCCTGATACCTGCATTGGACAAGAGAA
AACGATAGTTGACCATAAGTTGGCTTAGACAAGTGATTATTTTATTTGAGATTTTATTGATATT
AGCATGCCATGTCTGTCAGAATCATATTTTGGTTTACCGCTCTCTTACTTTACTTGACAGAATG
ATGAGGTGCCTCCAAGGACAAGATTGTTCCGTAGAAAAGGCAAAACCCGGAAGCTAAAATACTC
TACAAAGTCTGCTGGTCATCCGTCTGTCTGGAAAAGAATAGCTGGTGGCAAAAACCAGTCCTGT
AAACAATACACGCCGTGTGGATGCCTGTCAATGTGCGGAAAGGATTGCCCTTGTCTAACTAATG
AAACTTGCTGCGAGAAATATTGCGGGTATGCAAACAAATTAACGTCAATTGAAGTAACAGAGGA
TCTTCTTATAACCATCCATTGATTTAATTCAGGTGCTCAAAAAGCTGTAAAAATCGTTTCCGAG
GATGTCATTGTGCAAAGAGTCAATGCAGAAGTAGGCAGTGTCCCTGCTTTGCTGCTGGCAGAGA
ATGTGATCCAGATGTTTGCAGAAATTGCTGGGTTAGGTAGTCATTTTAAATCTAGATCTCTTGA
TGTGCCATATACAATCAAATCTACTATTTGATGAGTAACTTAAGATGCCTTGCTTATTCACTCA
GTTGTGGAGATGGTTCTCTCGGTGAAGCACCAAGACGCGGAGAAGGGCAATGCGGAAACATGAG
ACTTCTCCTGAGGCAACAACAGAGGGTATAATACTGTCATCAAATCATGTATTTACTAAAAATA
AAATGCATTCATTGTTGATAAATCTAGTTTCTCATGTGCTATATTTACCAGATCCTATTGGGAA
AGTCTGATGTTGCTGGATGGGGTGCTTTTCTAAAGGTAAAGCATGTGAATATCTTCCTCATTAA
CTTCTGTTTCATACCTCTTGTATGTAATCTGAACCTCATCTGATCATCAGAACTCGGTCAGCAA
AAATGAATACCTTGGAGAATACACCGGTGAATTGATCTCACACCATGAGGCGGATAAGCGTGGG
AAAATATATGACCGGGCAAATTCGTCCTTCCTCTTTGACTTGAATGATCAGGTGACCAAATCTC
TCACCCTTCTTTCTGATAGTTTCCTCTTGAATTTCGCATATGTCAGTAAGCTTTTGATATTTGC
AGTACGTCCTCGATGCTCAACGCAAAGGTGACAAGCTGAAATTTGCCAATCACTCAGCTAAACC
CAATTGCTACGCTAAG
						
					

			
		

Sequences
Splice junction sequence	AGTAAGCTTTTGATATTTGCAGTACGTCCTCGATGCTCAACGCAAAGGTGACAAGCTGAAATTT GCCAATCACTCAGCTAAACCCAATTGCTACGCTAAGaagtctcatgtagatgatgatgatgatg gtgaagaagaagaagatagactcgagggtttggaaaacagattaagtgagcttaaaaggaaaat tcaaggag
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 2343 Transcript exons: 886980-887099,887200-887465,887606-887764,888018-888102, 888206-888349,888438-888485,888570-888641,888885-889489, 889579-889726,890048-890268,890340-890471,890565-890652, 890743-890790,890870-890998,891078-891155 AAGTCTCATGTAGATGATGATGATGATGGTGAAGAAGAAGAAGATAGACTCGAGGGTTTGGAAA ACAGATTAAGTGAGCTTAAAAGGAAAATTCAAGGAGAAAGAGTTAGGTCTATTAAAGAGAAATT TGAGGCTAATAGAAAGAAAGTGGATGCTCATGTTTCTCCCTTTTCATCTGCTGCATCGAGCCGA GCTACCGCAGAGGATAATGGAAATAGCAATATGCTTTCTTCGAGAATGAGAATGCCACTCTGCA AGTTAAATGGTTTTTCTCATGGTGTGGGAGATAGAGACTATGTTCCTACTAAGGATGTTATATC AGCAAGTGTCAAGCTTCCTATTGCTGAGAGAATACCGCCATACACTACCTGGATATTTTTGGAC AGAAATCAAAGAATGGCTGAAGATCAGTCTGTGGTTGGTCGAAGACAAATCTACTATGAACAAC ATGGTGGTGAGACGCTAATATGCAGCGATAGTGAGGAAGAACCAGAACCTGAGGAGGAAAAACG TGAATTTTCCGAGGGTGAAGATTCCATTATATGGTTAATTGGGCAGGAGTATGGCATGGGTGAG GAAGTGCAGGATGCCCTTTGCCAGTTGCTAAGCGTAGATGCTTCTGATATCCTGGAAAGATACA ATGAGCTCAAGTTGAAGGATAAGCAGAATACCGAGGAATTTTCTAATTCCGGATTCAAGCTGGG AATATCTCTGGAAAAGGGCCTTGGTGCAGCTCTAGATTCTTTTGATAATCTTTTCTGCCGCCGT TGCTTGGTATTTGACTGTCGTCTGCATGGATGTTCTCAGCCTTTGATTAGTGCTAGTGAAAAAC AGCCTTATTGGTCTGATTATGAAGGTGATAGGAAACCCTGCAGCAAACATTGTTACCTCCAGCT CAAGGCGGTCAGAGAAGTACCAGAAACATGCAGTAATTTTGCATCTAAAGCAGAAGAGAAAGCT TCAGAAGAGGAATGCAGCAAGGCTGTCTCCTCTGATGTTCCCCATGCTGCTGCTAGTGGTGTCA GTCTGCAAGTTGAGAAGACTGATATTGGTATCAAGAATGTAGATTCATCCTCTGGTGTAGAACA AGAGCATGGAATTAGAGGAAAGCGTGAGGTCCCAATTCTAAAAGACTCCAATGATCTGCCTAAT TTATCGAACAAGAAACAGAAGACCGCAGCCTCAGATACAAAAATGTCATTTGTTAATTCTGTCC CTAGCTTAGATCAGGCATTGGATAGCACAAAGGGTGATCAAGGTGGAACAACTGACAATAAAGT AAACAGAGACTCAGAAGCTGATGCAAAAGAAGTAGGTGAGCCTATTCCAGACAATTCGGTCCAT GATGGTGGTTCCTCAATTTGTCAGCCACACCATGGTAGTGGAAACGGAGCAATAATCATTGCAG AAATGTCTGAGACAAGTCGACCATCTACAGAGTGGAATCCTATCGAGAAGGATCTTTACTTGAA GGGAGTCGAAATCTTTGGAAGAAACAGCTGTCTTATTGCAAGAAACCTGCTTTCTGGCTTGAAG ACATGCCTAGATGTGTCCAATTACATGCGTGAAAACGAAGTTTCAGTTTTTCGAAGATCTAGTA CCCCAAATTTGCTGTTGGATGATGGCAGGACTGACCCAGGGAATGATAATGATGAGGTGCCTCC AAGGACAAGATTGTTCCGTAGAAAAGGCAAAACCCGGAAGCTAAAATACTCTACAAAGTCTGCT GGTCATCCGTCTGTCTGGAAAAGAATAGCTGGTGGCAAAAACCAGTCCTGTAAACAATACACGC CGTGTGGATGCCTGTCAATGTGCGGAAAGGATTGCCCTTGTCTAACTAATGAAACTTGCTGCGA GAAATATTGCGGGTGCTCAAAAAGCTGTAAAAATCGTTTCCGAGGATGTCATTGTGCAAAGAGT CAATGCAGAAGTAGGCAGTGTCCCTGCTTTGCTGCTGGCAGAGAATGTGATCCAGATGTTTGCA GAAATTGCTGGGTTAGTTGTGGAGATGGTTCTCTCGGTGAAGCACCAAGACGCGGAGAAGGGCA ATGCGGAAACATGAGACTTCTCCTGAGGCAACAACAGAGGATCCTATTGGGAAAGTCTGATGTT GCTGGATGGGGTGCTTTTCTAAAGAACTCGGTCAGCAAAAATGAATACCTTGGAGAATACACCG GTGAATTGATCTCACACCATGAGGCGGATAAGCGTGGGAAAATATATGACCGGGCAAATTCGTC CTTCCTCTTTGACTTGAATGATCAGTACGTCCTCGATGCTCAACGCAAAGGTGACAAGCTGAAA TTTGCCAATCACTCAGCTAAACCCAATTGCTACGCTAAG
Genomic sequence	AAGTCTCATGTAGATGATGATGATGATGGTGAAGAAGAAGAAGATAGACTCGAGGGTTTGGAAA ACAGATTAAGTGAGCTTAAAAGGAAAATTCAAGGAGAAAGAGTTAGGTCTATTAAAGTAAGAGA GTTTCTATACTTGATGTTCTTTACTAATTATACTAATGTCTAAAAAATTTGAAATCATTTATCC GTTTTTGATTGTTTTCCTGGGAATGTAGGAGAAATTTGAGGCTAATAGAAAGAAAGTGGATGCT CATGTTTCTCCCTTTTCATCTGCTGCATCGAGCCGAGCTACCGCAGAGGATAATGGAAATAGCA ATATGCTTTCTTCGAGAATGAGAATGCCACTCTGCAAGTTAAATGGTTTTTCTCATGGTGTGGG AGATAGAGACTATGTTCCTACTAAGGATGTTATATCAGCAAGTGTCAAGCTTCCTATTGCTGAG AGAATACCGCCATACACTACCTGGATATTTTTGGACAGGCATGCACCTTTTCTAGTTCTCATTT TTGCGTTGGTAGCATGCTATTCTAAATTCAGTTGAACAATAGACTAGAACATCAAATTCAGTTT TCATATTATGTGTTGTTTTTCTTTTCTGAAAAAATATCTTAACCATGCAGAAATCAAAGAATGG CTGAAGATCAGTCTGTGGTTGGTCGAAGACAAATCTACTATGAACAACATGGTGGTGAGACGCT AATATGCAGCGATAGTGAGGAAGAACCAGAACCTGAGGAGGAAAAACGTGAATTTTCCGAGGGT GAAGATTCCATTATATGGTTAGTTTTGCAGAGAGTGTAAATTATGGACTCTCATGTACTCTGAT GGGGAAAAATTGTGATACTGGTATTTGAAGAAGTACCTGGGTGGAATTTATTAACCAATGAATC ACATTTGTTGATGCTAAAAAAAGATGTCATATTTCGTATTCATATCAAATTTCATTCTGTAAGA CTCTTCATTAGCATTAGGTTTGAAATATATCTCACTATATATGAATTTCTTCATACCTCGTTTG ACTTGAATTGGCAGGTTAATTGGGCAGGAGTATGGCATGGGTGAGGAAGTGCAGGATGCCCTTT GCCAGTTGCTAAGCGTAGATGCTTCTGATATCCTGGTGCAGTTTTTAGTCATCTTGTTCTTGTG GTTTATCTAATGATGTTTTTCTGGTCTTCCTATTCTTCTTCACTAATGATGTTTGGCTTTCCTG TCTGCTGCAGGAAAGATACAATGAGCTCAAGTTGAAGGATAAGCAGAATACCGAGGAATTTTCT AATTCCGGATTCAAGCTGGGAATATCTCTGGAAAAGGGCCTTGGTGCAGCTCTAGATTCTTTTG ATAATCTTTTCTGCCGCCGTTGCTTGGTACTTGGATTGTTCTTTGTGACAGAGAGAGCATGTAT TATTAAGTGTTTGTTAATCATGTTAATCCTTCTTTGGTTATTTCTAACAGGTATTTGACTGTCG TCTGCATGGATGTTCTCAGCCTTTGATTAGTGCTGTAAGCTTGAATTTGTCTTTACTTTCTTTA GTTGTATTGCTAAAGTTTCAGTGGACAACATAACAAGAGAACTTTGGTTGACAGAGTGAAAAAC AGCCTTATTGGTCTGATTATGAAGGTGATAGGAAACCCTGCAGCAAACATTGTTACCTCCAGGT CTATCTCTCTCTCTGTCTCTTTACATTCTCAGAGTGATTTGTATATTCGTAGTTAATAAACTAT ATTCATTAGTGAGATCATGGAATATATGCTCTGACCTAGATTGAGGTTTAGCATGTATGCGTTT GCTAGAGGAGTGATCTTTCATTGTAGTTGTACTAGTGCATAGTCTTGTTTATGCAGTAATTTTT CTTGGTTCCAGAGTTTGAATCACCATTATTCTTATGTTAATGATTTTAGCTCAAGGCGGTCAGA GAAGTACCAGAAACATGCAGTAATTTTGCATCTAAAGCAGAAGAGAAAGCTTCAGAAGAGGAAT GCAGCAAGGCTGTCTCCTCTGATGTTCCCCATGCTGCTGCTAGTGGTGTCAGTCTGCAAGTTGA GAAGACTGATATTGGTATCAAGAATGTAGATTCATCCTCTGGTGTAGAACAAGAGCATGGAATT AGAGGAAAGCGTGAGGTCCCAATTCTAAAAGACTCCAATGATCTGCCTAATTTATCGAACAAGA AACAGAAGACCGCAGCCTCAGATACAAAAATGTCATTTGTTAATTCTGTCCCTAGCTTAGATCA GGCATTGGATAGCACAAAGGGTGATCAAGGTGGAACAACTGACAATAAAGTAAACAGAGACTCA GAAGCTGATGCAAAAGAAGTAGGTGAGCCTATTCCAGACAATTCGGTCCATGATGGTGGTTCCT CAATTTGTCAGCCACACCATGGTAGTGGAAACGGAGCAATAATCATTGCAGAAATGTCTGAGAC AAGTCGACCATCTACAGAGTGGAATCCTATCGAGAAGGATCTTTACTTGAAGGGAGTCGAAATC TTTGGAAGAAACAGGTAAACTGGATCTTGGTAAATTATTATCTTTAAACACAGAACACCTATAA CGTATTTACATCTAGTATGTTTTGTCCGTGCTATCTCAGCTGTCTTATTGCAAGAAACCTGCTT TCTGGCTTGAAGACATGCCTAGATGTGTCCAATTACATGCGTGAAAACGAAGTTTCAGTTTTTC GAAGATCTAGTACCCCAAATTTGCTGTTGGATGATGGCAGGACTGACCCAGGGAATGATGTAAG CTCTTGATCTTCCTAGGGTCTTTTGTCTTTTCAAATTTTCTGCAGTATCTGCGACTTTGGGCAT TGTTGTATTGAAAGTTAGCTTGTCAGACTGATAGGGTTAGAGATCTATTCCAGAAGAAAAAAGT TCTGATCCGGAAAAGCCAATTTCCTTGCTTAATTTTTCCCTGATACCTGCATTGGACAAGAGAA AACGATAGTTGACCATAAGTTGGCTTAGACAAGTGATTATTTTATTTGAGATTTTATTGATATT AGCATGCCATGTCTGTCAGAATCATATTTTGGTTTACCGCTCTCTTACTTTACTTGACAGAATG ATGAGGTGCCTCCAAGGACAAGATTGTTCCGTAGAAAAGGCAAAACCCGGAAGCTAAAATACTC TACAAAGTCTGCTGGTCATCCGTCTGTCTGGAAAAGAATAGCTGGTGGCAAAAACCAGTCCTGT AAACAATACACGCCGTGTGGATGCCTGTCAATGTGCGGAAAGGATTGCCCTTGTCTAACTAATG AAACTTGCTGCGAGAAATATTGCGGGTATGCAAACAAATTAACGTCAATTGAAGTAACAGAGGA TCTTCTTATAACCATCCATTGATTTAATTCAGGTGCTCAAAAAGCTGTAAAAATCGTTTCCGAG GATGTCATTGTGCAAAGAGTCAATGCAGAAGTAGGCAGTGTCCCTGCTTTGCTGCTGGCAGAGA ATGTGATCCAGATGTTTGCAGAAATTGCTGGGTTAGGTAGTCATTTTAAATCTAGATCTCTTGA TGTGCCATATACAATCAAATCTACTATTTGATGAGTAACTTAAGATGCCTTGCTTATTCACTCA GTTGTGGAGATGGTTCTCTCGGTGAAGCACCAAGACGCGGAGAAGGGCAATGCGGAAACATGAG ACTTCTCCTGAGGCAACAACAGAGGGTATAATACTGTCATCAAATCATGTATTTACTAAAAATA AAATGCATTCATTGTTGATAAATCTAGTTTCTCATGTGCTATATTTACCAGATCCTATTGGGAA AGTCTGATGTTGCTGGATGGGGTGCTTTTCTAAAGGTAAAGCATGTGAATATCTTCCTCATTAA CTTCTGTTTCATACCTCTTGTATGTAATCTGAACCTCATCTGATCATCAGAACTCGGTCAGCAA AAATGAATACCTTGGAGAATACACCGGTGAATTGATCTCACACCATGAGGCGGATAAGCGTGGG AAAATATATGACCGGGCAAATTCGTCCTTCCTCTTTGACTTGAATGATCAGGTGACCAAATCTC TCACCCTTCTTTCTGATAGTTTCCTCTTGAATTTCGCATATGTCAGTAAGCTTTTGATATTTGC AGTACGTCCTCGATGCTCAACGCAAAGGTGACAAGCTGAAATTTGCCAATCACTCAGCTAAACC CAATTGCTACGCTAAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.185190498

Conservation Information
Conserved circRNAs	NA
PMCS	0.185190498

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							887302-891152(+)
						
					

						Potential amino acid sequence
						
							MLSSRMRMPLCKLNGFSHGVGDRDYVPTKDVISASVKLPIAERIPPYTTWIFLDRNQRMAEDQS
VVGRRQIYYEQHGGETLICSDSEEEPEPEEEKREFSEGEDSIIWLIGQEYGMGEEVQDALCQLL
SVDASDILERYNELKLKDKQNTEEFSNSGFKLGISLEKGLGAALDSFDNLFCRRCLVFDCRLHG
CSQPLISASEKQPYWSDYEGDRKPCSKHCYLQLKAVREVPETCSNFASKAEEKASEEECSKAVS
SDVPHAAASGVSLQVEKTDIGIKNVDSSSGVEQEHGIRGKREVPILKDSNDLPNLSNKKQKTAA
SDTKMSFVNSVPSLDQALDSTKGDQGGTTDNKVNRDSEADAKEVGEPIPDNSVHDGGSSICQPH
HGSGNGAIIIAEMSETSRPSTEWNPIEKDLYLKGVEIFGRNSCLIARNLLSGLKTCLDVSNYMR
ENEVSVFRRSSTPNLLLDDGRTDPGNDNDEVPPRTRLFRRKGKTRKLKYSTKSAGHPSVWKRIA
GGKNQSCKQYTPCGCLSMCGKDCPCLTNETCCEKYCGCSKSCKNRFRGCHCAKSQCRSRQCPCF
AAGRECDPDVCRNCWVSCGDGSLGEAPRRGEGQCGNMRLLLRQQQRILLGKSDVAGWGAFLKNS
VSKNEYLGEYTGELISHHEADKRGKIYDRANSSFLFDLNDQYVLDAQRKGDKLKFANHSAKPNC
YAKKSHVDDDDDGEEEEDRLEGLENRLSELKRKIQGERVRSIKEKFEANRKKVDAHVSPFSSAA
SSRATAEDNGNSNMLSSRMRMPLCKLNGFSHGVGDRDYVPTKDVISASVKLPIAERIPPYTTWI
FLDRNQRMAEDQSVVGRRQIYYEQHGGETLICSDSEEEPEPEEEKREFSEGEDSIIWLIGQEYG
MGEEVQDALCQLLSVDASDILERYNELKLKDKQNTEEFSNSGFKLGISLEKGLGAALDSFDNLF
CRRCLVFDCRLHGCSQPLISASEKQPYWSDYEGDRKPCSKHCYLQLKAVREVPETCSNFASKAE
EKASEEECSKAVSSDVPHAAASGVSLQVEKTDIGIKNVDSSSGVEQEHGIRGKREVPILKDSND
LPNLSNKKQKTAASDTKMSFVNSVPSLDQALDSTKGDQGGTTDNKVNRDSEADAKEVGEPIPDN
SVHDGGSSICQPHHGSGNGAIIIAEMSETSRPSTEWNPIEKDLYLKGVEIFGRNSCLIARNLLS
GLKTCLDVSNYMRENEVSVFRRSSTPNLLLDDGRTDPGNDNDEVPPRTRLFRRKGKTRKLKYST
KSAGHPSVWKRIAGGKNQSCKQYTPCGCLSMCGKDCPCLTNETCCEKYCGCSKSCKNRFRGCHC
AKSQCRSRQCPCFAAGRECDPDVCRNCWVSCGDGSLGEAPRRGEGQCGNMRLLLRQQQRILLGK
SDVAGWGAFLKNSVSKNEYLGEYTGELISHHEADKRGKIYDRANSSFLFDLNDQYVLDAQRKGD
KLKFANHSAKPNCYAKKSHVDDDDDGEEEEDRLEGLENRLSELKRKIQGERVRSIKEKFEANRK
KVDAHVSPFSSAASSRATAEDNGNSNMLSSRMRMPLCKLNGFSHGVGDRDYVPTKDVISASVKL
PIAERIPPYTTWIFLDRNQRMAEDQSVVGRRQIYYEQHGGETLICSDSEEEPEPEEEKREFSEG
EDSIIWLIGQEYGMGEEVQDALCQLLSVDASDILERYNELKLKDKQNTEEFSNSGFKLGISLEK
GLGAALDSFDNLFCRRCLVFDCRLHGCSQPLISASEKQPYWSDYEGDRKPCSKHCYLQLKAVRE
VPETCSNFASKAEEKASEEECSKAVSSDVPHAAASGVSLQVEKTDIGIKNVDSSSGVEQEHGIR
GKREVPILKDSNDLPNLSNKKQKTAASDTKMSFVNSVPSLDQALDSTKGDQGGTTDNKVNRDSE
ADAKEVGEPIPDNSVHDGGSSICQPHHGSGNGAIIIAEMSETSRPSTEWNPIEKDLYLKGVEIF
GRNSCLIARNLLSGLKTCLDVSNYMRENEVSVFRRSSTPNLLLDDGRTDPGNDNDEVPPRTRLF
RRKGKTRKLKYSTKSAGHPSVWKRIAGGKNQSCKQYTPCGCLSMCGKDCPCLTNETCCEKYCGC
SKSCKNRFRGCHCAKSQCRSRQCPCFAAGRECDPDVCRNCWVSCGDGSLGEAPRRGEGQCGNMR
LLLRQQQRILLGKSDVAGWGAFLKNSVSKNEYLGEYTGELISHHEADKRGKIYDRANSSFLFDL
NDQYVLDAQRKGDKLKFANHSAKPNCYAKKSHVDDDDDGEEEEDRLEGLENRLSELKRKIQGER
VRSIKEKFEANRKKVDAHVSPFSSAASSRATAEDNGNSNMLSSRMRMPLCKLNGFSHGVGDRDY
VPTKDVISASVKLPIAERIPPYTTWIFLDRNQRMAEDQSVVGRRQIYYEQHGGETLICSDSEEE
PEPEEEKREFSEGEDSIIWLIGQEYGMGEEVQDALCQLLSVDASDILERYNELKLKDKQNTEEF
SNSGFKLGISLEKGLGAALDSFDNLFCRRCLVFDCRLHGCSQPLISASEKQPYWSDYEGDRKPC
SKHCYLQLKAVREVPETCSNFASKAEEKASEEECSKAVSSDVPHAAASGVSLQVEKTDIGIKNV
DSSSGVEQEHGIRGKREVPILKDSNDLPNLSNKKQKTAASDTKMSFVNSVPSLDQALDSTKGDQ
GGTTDNKVNRDSEADAKEVGEPIPDNSVHDGGSSICQPHHGSGNGAIIIAEMSETSRPSTEWNP
IEKDLYLKGVEIFGRNSCLIARNLLSGLKTCLDVSNYMRENEVSVFRRSSTPNLLLDDGRTDPG
NDNDEVPPRTRLFRRKGKTRKLKYSTKSAGHPSVWKRIAGGKNQSCKQYTPCGCLSMCGKDCPC
LTNETCCEKYCGCSKSCKNRFRGCHCAKSQCRSRQCPCFAAGRECDPDVCRNCWVSCGDGSLGE
APRRGEGQCGNMRLLLRQQQRILLGKSDVAGWGAFLKNSVSKNEYLGEYTGELISHHEADKRGK
IYDRANSSFLFDLNDQYVLDAQRKGDKLKFANHSAKPNCYAK(+)
						
					

						Sponge-miRNAs
						
							ath-miR5658 						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	887302-891152(+)
Potential amino acid sequence	MLSSRMRMPLCKLNGFSHGVGDRDYVPTKDVISASVKLPIAERIPPYTTWIFLDRNQRMAEDQS VVGRRQIYYEQHGGETLICSDSEEEPEPEEEKREFSEGEDSIIWLIGQEYGMGEEVQDALCQLL SVDASDILERYNELKLKDKQNTEEFSNSGFKLGISLEKGLGAALDSFDNLFCRRCLVFDCRLHG CSQPLISASEKQPYWSDYEGDRKPCSKHCYLQLKAVREVPETCSNFASKAEEKASEEECSKAVS SDVPHAAASGVSLQVEKTDIGIKNVDSSSGVEQEHGIRGKREVPILKDSNDLPNLSNKKQKTAA SDTKMSFVNSVPSLDQALDSTKGDQGGTTDNKVNRDSEADAKEVGEPIPDNSVHDGGSSICQPH HGSGNGAIIIAEMSETSRPSTEWNPIEKDLYLKGVEIFGRNSCLIARNLLSGLKTCLDVSNYMR ENEVSVFRRSSTPNLLLDDGRTDPGNDNDEVPPRTRLFRRKGKTRKLKYSTKSAGHPSVWKRIA GGKNQSCKQYTPCGCLSMCGKDCPCLTNETCCEKYCGCSKSCKNRFRGCHCAKSQCRSRQCPCF AAGRECDPDVCRNCWVSCGDGSLGEAPRRGEGQCGNMRLLLRQQQRILLGKSDVAGWGAFLKNS VSKNEYLGEYTGELISHHEADKRGKIYDRANSSFLFDLNDQYVLDAQRKGDKLKFANHSAKPNC YAKKSHVDDDDDGEEEEDRLEGLENRLSELKRKIQGERVRSIKEKFEANRKKVDAHVSPFSSAA SSRATAEDNGNSNMLSSRMRMPLCKLNGFSHGVGDRDYVPTKDVISASVKLPIAERIPPYTTWI FLDRNQRMAEDQSVVGRRQIYYEQHGGETLICSDSEEEPEPEEEKREFSEGEDSIIWLIGQEYG MGEEVQDALCQLLSVDASDILERYNELKLKDKQNTEEFSNSGFKLGISLEKGLGAALDSFDNLF CRRCLVFDCRLHGCSQPLISASEKQPYWSDYEGDRKPCSKHCYLQLKAVREVPETCSNFASKAE EKASEEECSKAVSSDVPHAAASGVSLQVEKTDIGIKNVDSSSGVEQEHGIRGKREVPILKDSND LPNLSNKKQKTAASDTKMSFVNSVPSLDQALDSTKGDQGGTTDNKVNRDSEADAKEVGEPIPDN SVHDGGSSICQPHHGSGNGAIIIAEMSETSRPSTEWNPIEKDLYLKGVEIFGRNSCLIARNLLS GLKTCLDVSNYMRENEVSVFRRSSTPNLLLDDGRTDPGNDNDEVPPRTRLFRRKGKTRKLKYST KSAGHPSVWKRIAGGKNQSCKQYTPCGCLSMCGKDCPCLTNETCCEKYCGCSKSCKNRFRGCHC AKSQCRSRQCPCFAAGRECDPDVCRNCWVSCGDGSLGEAPRRGEGQCGNMRLLLRQQQRILLGK SDVAGWGAFLKNSVSKNEYLGEYTGELISHHEADKRGKIYDRANSSFLFDLNDQYVLDAQRKGD KLKFANHSAKPNCYAKKSHVDDDDDGEEEEDRLEGLENRLSELKRKIQGERVRSIKEKFEANRK KVDAHVSPFSSAASSRATAEDNGNSNMLSSRMRMPLCKLNGFSHGVGDRDYVPTKDVISASVKL PIAERIPPYTTWIFLDRNQRMAEDQSVVGRRQIYYEQHGGETLICSDSEEEPEPEEEKREFSEG EDSIIWLIGQEYGMGEEVQDALCQLLSVDASDILERYNELKLKDKQNTEEFSNSGFKLGISLEK GLGAALDSFDNLFCRRCLVFDCRLHGCSQPLISASEKQPYWSDYEGDRKPCSKHCYLQLKAVRE VPETCSNFASKAEEKASEEECSKAVSSDVPHAAASGVSLQVEKTDIGIKNVDSSSGVEQEHGIR GKREVPILKDSNDLPNLSNKKQKTAASDTKMSFVNSVPSLDQALDSTKGDQGGTTDNKVNRDSE ADAKEVGEPIPDNSVHDGGSSICQPHHGSGNGAIIIAEMSETSRPSTEWNPIEKDLYLKGVEIF GRNSCLIARNLLSGLKTCLDVSNYMRENEVSVFRRSSTPNLLLDDGRTDPGNDNDEVPPRTRLF RRKGKTRKLKYSTKSAGHPSVWKRIAGGKNQSCKQYTPCGCLSMCGKDCPCLTNETCCEKYCGC SKSCKNRFRGCHCAKSQCRSRQCPCFAAGRECDPDVCRNCWVSCGDGSLGEAPRRGEGQCGNMR LLLRQQQRILLGKSDVAGWGAFLKNSVSKNEYLGEYTGELISHHEADKRGKIYDRANSSFLFDL NDQYVLDAQRKGDKLKFANHSAKPNCYAKKSHVDDDDDGEEEEDRLEGLENRLSELKRKIQGER VRSIKEKFEANRKKVDAHVSPFSSAASSRATAEDNGNSNMLSSRMRMPLCKLNGFSHGVGDRDY VPTKDVISASVKLPIAERIPPYTTWIFLDRNQRMAEDQSVVGRRQIYYEQHGGETLICSDSEEE PEPEEEKREFSEGEDSIIWLIGQEYGMGEEVQDALCQLLSVDASDILERYNELKLKDKQNTEEF SNSGFKLGISLEKGLGAALDSFDNLFCRRCLVFDCRLHGCSQPLISASEKQPYWSDYEGDRKPC SKHCYLQLKAVREVPETCSNFASKAEEKASEEECSKAVSSDVPHAAASGVSLQVEKTDIGIKNV DSSSGVEQEHGIRGKREVPILKDSNDLPNLSNKKQKTAASDTKMSFVNSVPSLDQALDSTKGDQ GGTTDNKVNRDSEADAKEVGEPIPDNSVHDGGSSICQPHHGSGNGAIIIAEMSETSRPSTEWNP IEKDLYLKGVEIFGRNSCLIARNLLSGLKTCLDVSNYMRENEVSVFRRSSTPNLLLDDGRTDPG NDNDEVPPRTRLFRRKGKTRKLKYSTKSAGHPSVWKRIAGGKNQSCKQYTPCGCLSMCGKDCPC LTNETCCEKYCGCSKSCKNRFRGCHCAKSQCRSRQCPCFAAGRECDPDVCRNCWVSCGDGSLGE APRRGEGQCGNMRLLLRQQQRILLGKSDVAGWGAFLKNSVSKNEYLGEYTGELISHHEADKRGK IYDRANSSFLFDLNDQYVLDAQRKGDKLKFANHSAKPNCYAK(+)
Sponge-miRNAs	ath-miR5658
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of AT4G02020_circ_g.2

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