Detail information of BGIOSGA033820_circ_ag.1


General Information
CircRNA Name BGIOSGA033820_circ_ag.1
ID in PlantcircBase osi_circ_003186
Alias 11:17206611|17216702
Organism Oryza sativa ssp. indica
Position chr11: 17206611-17216702  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ag-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA033820_circ_igg.1 BGIOSGA033819_circ_igg.1
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGGACCTCATCCATCTGCCTGCGAAACAACATGAGGCGCCCGACCGCCCTCCCGGTCATCCTCC
CCGCCACCCTCGCGATCTTGATCATGTCGCTGCGCTtcatcatgagggagcaagccccgaggat
gaccaccaactggccggtggagaaccccagcatcctgccttcccctcgaatcaccggccgccgc
cgccaaga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs osa_circ_009605*
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description leaf senescence
Other Information
References Huang et al., 2021