Detail information of Os05g0389600_circ_g.1


General Information
CircRNA Name Os05g0389600_circ_g.1
ID in PlantcircBase osa_circ_027752
Alias Os_ciR3059
Organism Oryza sativa
Position chr5: 18863655-18865907  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, find_circ
Parent gene Os05g0389600
Parent gene annotation Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os05
t0389600-01)
Parent gene strand +
Alternative splicing Os05g0389600_circ_g.2
Support reads 4/1
Tissues root/shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os05t0389600-01:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCCTTGTTGAATATGCCGAGGGAGACTGTGTCCGTATTCTTCCATGCAATCATGAATTTCATCT
AACATGCGTAGATAAATGGTTGAAAGAGATACACAGtctagcaagggagaggagaatggaagcc
tgccttcaatcgctcaaatggacaaatcagaagaggatgctcccacaatccctaaatctcatcc
aggtgaag
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1313
Transcript exons: 18863655-18864497,18864571-18864774,18864870-18865024,18
865797-18865907
TCTAGCAAGGGAGAGGAGAATGGAAGCCTGCCTTCAATCGCTCAAATGGACAAATCAGAAGAGG
ATGCTCCCACAATCCCTAAATCTCATCCAGGTGAAGGGGCAACATTGCCTTCATCACATATAAA
CAGGGATCAGGATGTTGATGTATTGCAGAATGCCACTGCCGTCAACAACAGGGTGGAGGTCAAC
CAGTCACCAAATCATTCTGACAGTTCACGGCCACGTTTTGGTGTCAACTTCGGGTTGAGTAGAG
CTGTCAGCTTGGGATCATCGGTAGCCTGCTCCATTCTCTCATCGGACCTCTCCACTTCAGCTAA
TCCTGATGGAGGCCATGGAAATGTGGACAATTCTTCTGATGCAAACATCTCCCAGCAAGGTGGT
GCATCAACTGCTGGGATTGATTCGACTCTGGATATGCTTAGAGATAGTGTAACCGCACAAGCTA
GAGCAGCCCATCAGGCTAGGAGAAATTTGCTAGAATCCGACAATGCTAACTTGAGATATTCCAA
CAGAAGGATGGGACCTCAGGAACCTTTTGAAGGCAGTGTTCGATTCAGCCGAACGTTGAGTGTT
GGACGTCTTCGTGACAGAGTTCTTAGGAGGACTCCATTCTCAGATGGGTTATTCACCCCTTCAC
TTCTTTACGATAGGGCAATATGGCCATCAGGAAATGCTAGTGCCAGGCAAAATTCAGCAATCAT
GCAAAGGACTAATTCAGAGAGAAATTCTGAACTGCAATTGGATTCTTCAACCGACTCTGCAACT
CTAAGAGAGGCCAATAATCGGGATCTACTGGAGCGCAGATCAGCTTTTCTTGAGAGGAGGAGGA
TACGATCTCAGGTCCGAGCTCTCCAAAGATTGGGCAGCAGGTATGAAAATCTATCAGGACTATC
AGGACATGAGAGATCATGCATACTATCTGGTCAGCATAGAACGGGAAATTGTAATTGCAGAACG
AGCAGTCGACCAGGAAATTCTGATGAAGAAACAAACACAAGAGCTAGCATATCAAGAATCGTTA
TGTTAGCAGAAGCACTTTTTGAGGTTCTGGATGAGATCCACCAACAGTCTGCTGCCTTATCCTC
AAGGCCATCGTTTTCTTCAATTGGGTCCGTTCCTGCTCCAAAGGAGGTTGTCGAGCGTCTTCCT
GTAAAAGTATACAGGAGATCATTAAAACACCAAACTGAGGAGGCTGCACAATGCTACATTTGCC
TTGTTGAATATGCCGAGGGAGACTGTGTCCGTATTCTTCCATGCAATCATGAATTTCATCTAAC
ATGCGTAGATAAATGGTTGAAAGAGATACACAG

Genomic sequence TCTAGCAAGGGAGAGGAGAATGGAAGCCTGCCTTCAATCGCTCAAATGGACAAATCAGAAGAGG
ATGCTCCCACAATCCCTAAATCTCATCCAGGTGAAGGGGCAACATTGCCTTCATCACATATAAA
CAGGGATCAGGATGTTGATGTATTGCAGAATGCCACTGCCGTCAACAACAGGGTGGAGGTCAAC
CAGTCACCAAATCATTCTGACAGTTCACGGCCACGTTTTGGTGTCAACTTCGGGTTGAGTAGAG
CTGTCAGCTTGGGATCATCGGTAGCCTGCTCCATTCTCTCATCGGACCTCTCCACTTCAGCTAA
TCCTGATGGAGGCCATGGAAATGTGGACAATTCTTCTGATGCAAACATCTCCCAGCAAGGTGGT
GCATCAACTGCTGGGATTGATTCGACTCTGGATATGCTTAGAGATAGTGTAACCGCACAAGCTA
GAGCAGCCCATCAGGCTAGGAGAAATTTGCTAGAATCCGACAATGCTAACTTGAGATATTCCAA
CAGAAGGATGGGACCTCAGGAACCTTTTGAAGGCAGTGTTCGATTCAGCCGAACGTTGAGTGTT
GGACGTCTTCGTGACAGAGTTCTTAGGAGGACTCCATTCTCAGATGGGTTATTCACCCCTTCAC
TTCTTTACGATAGGGCAATATGGCCATCAGGAAATGCTAGTGCCAGGCAAAATTCAGCAATCAT
GCAAAGGACTAATTCAGAGAGAAATTCTGAACTGCAATTGGATTCTTCAACCGACTCTGCAACT
CTAAGAGAGGCCAATAATCGGGATCTACTGGAGCGCAGATCAGCTTTTCTTGAGAGGAGGAGGA
TACGATCTCAGGTGATCTGTGTTTCAACTATTTTGAGCCTTTAGTTTTCAGCTATACATACTAA
TGTGTTTGCTTTCTTAACAGGTCCGAGCTCTCCAAAGATTGGGCAGCAGGTATGAAAATCTATC
AGGACTATCAGGACATGAGAGATCATGCATACTATCTGGTCAGCATAGAACGGGAAATTGTAAT
TGCAGAACGAGCAGTCGACCAGGAAATTCTGATGAAGAAACAAACACAAGAGCTAGCATATCAA
GAATCGTTATGTTAGCAGAAGCACTTTTTGAGGTAAGTAGTACAATTGTTTGTAGTTATTGCCG
CTTTCTTTTACTGGAGAAAAATGTTAAATTGCATCCATAATTCCATATGGTTATACACATCAGG
TTCTGGATGAGATCCACCAACAGTCTGCTGCCTTATCCTCAAGGCCATCGTTTTCTTCAATTGG
GTCCGTTCCTGCTCCAAAGGAGGTTGTCGAGCGTCTTCCTGTAAAAGTATACAGGAGATCATTA
AAACACCAAACTGAGGAGGCTGCACAGTAAGCCACTGAGCTTGTATAGAAATTATTTAACATTT
TTAGTTCAATATTTGAACTTCTACCCATGCTCAATTTATAGCCATTATTATTTGCCCACAAAGT
TCAGAGTCTAAAACTAAATCTTGAGGACAAGTGAAGCAGAGGCAAGTAAAAAACTGTGAATGTC
TAGAGTGATTAAGATCTTATGTCTTTTAATTGCATAGGCATAAGATTATTTGTGCTATTTGATC
ACCCATCAAGTGCTTGGATGAAGACATGAGCGGTATTGAGTTGCTATCAACGCTCTATCTAGCC
ACAAACACATGCCATTTTTAAGTCAACATTTAAGTGCATGGTCTATGGATGCAACCTTTTTCCA
CTGAAATTTGCTTTTATTTATTTATAAAATTCTATAAAACTATGGTACCATGAATGTAGTTTAT
GAGACATTTCTTCACATCTACTTTTTTACTCATCCAAACTAAATAGAACTGGTGTTAGTACTCA
AAAGTTTTGATACTTTGACTAGATGTTGTGATGTATCATGCGTGGTCCGAAATTCCAAATTTTA
AGCTGAGTATAAGAAAGGGCCCATGGATGCTAATTCTTGGCTTCTCGCAATATAACAGAATTGC
TATTCTCTTCATAGGGCATTTGAGCTGCTAGTTCATTTCCAGCTTAGGCTGTTGCGTCTGTAAA
TTTTTCTACTGTAGAATTATTTAGTACTATCGTTGAATAAATCTAAAGAAAAGTGTGTCATTTT
GCAACTTCTCATCTTTTCCTTGCTATGCAGATGCTACATTTGCCTTGTTGAATATGCCGAGGGA
GACTGTGTCCGTATTCTTCCATGCAATCATGAATTTCATCTAACATGCGTAGATAAATGGTTGA
AAGAGATACACAG
Conservation Information
Conserved circRNAs NA
PMCS 0.408116238
Functional Information
Coding potential Y
Potential coding position 18863701-18863778(+)
18865888-18863778(+)
Potential amino acid sequence MDKSEEDAPTIPKSHPGEGATLPSSHINRDQDVDVLQNATAVNNRVEVNQSPNHSDSSRPRFGV
NFGLSRAVSLGSSVACSILSSDLSTSANPDGGHGNVDNSSDANISQQGGASTAGIDSTLDMLRD
SVTAQARAAHQARRNLLESDNANLRYSNRRMGPQEPFEGSVRFSRTLSVGRLRDRVLRRTPFSD
GLFTPSLLYDRAIWPSGNASARQNSAIMQRTNSERNSELQLDSSTDSATLREANNRDLLERRSA
FLERRRIRSQVRALQRLGSRYENLSGLSGHERSCILSGQHRTGNCNCRTSSRPGNSDEETNTRA
SISRIVMLAEALFEVLDEIHQQSAALSSRPSFSSIGSVPAPKEVVERLPVKVYRRSLKHQTEEA
AQCYICLVEYAEGDCVRILPCNHEFHLTCVDKWLKEIHSLARERRMEACLQSLKWTNQKRMLPQ
SLNLIQVKGQHCLHHI*(+)
MVERDTQSSKGEENGSLPSIAQMDKSEEDAPTIPKSHPGEGATLPSSHINRDQDVDVLQNATAV
NNRVEVNQSPNHSDSSRPRFGVNFGLSRAVSLGSSVACSILSSDLSTSANPDGGHGNVDNSSDA
NISQQGGASTAGIDSTLDMLRDSVTAQARAAHQARRNLLESDNANLRYSNRRMGPQEPFEGSVR
FSRTLSVGRLRDRVLRRTPFSDGLFTPSLLYDRAIWPSGNASARQNSAIMQRTNSERNSELQLD
SSTDSATLREANNRDLLERRSAFLERRRIRSQVRALQRLGSRYENLSGLSGHERSCILSGQHRT
GNCNCRTSSRPGNSDEETNTRASISRIVMLAEALFEVLDEIHQQSAALSSRPSFSSIGSVPAPK
EVVERLPVKVYRRSLKHQTEEAAQCYICLVEYAEGDCVRILPCNHEFHLTCVDKWLKEIHSLAR
ERRMEACLQSLKWTNQKRMLPQSLNLIQVKGQHCLHHI*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017