Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Os03g0719300_circ_g.7 |
| ID in PlantcircBase | osa_circ_021329 |
| Alias | Os_ciR8786 |
| Organism | Oryza sativa |
| Position | chr3: 29139724-29141536 JBrowse» |
| Reference genome | IRGSP-1.0.38 |
| Type | ue-circRNA |
| Identification method | find_circ |
| Parent gene | Os03g0719300 |
| Parent gene annotation |
Similar to Dihydroxyacetone/glycerone kinase-like protein. (Os03 t0719300-01);Similar to Dihydroxyacetone kinase-like protein. (O s03t0719300-02) |
| Parent gene strand | - |
| Alternative splicing | Os03g0719300_circ_g.3 Os03g0719300_circ_g.4 Os03g0719300_circ_g.5 Os03g0719300_circ_g.6 Os03g0719300_circ_g.8 Os03g0719300_circ_g.9 Os03g0719300_circ_g.10 Os03g0719300_circ_g.11 Os03g0719300_circ_g.12 Os03g0719300_circ_g.13 Os03g0719300_circ_g.14 Os03g0719300_circ_g.15 |
| Support reads | 2 |
| Tissues | root |
| Exon boundary | Yes-Yes |
| Splicing signals | CT-AC |
| Number of exons covered | Os03t0719300-01:6 Os03t0719300-02:4 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.24289374 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
29141408-29139957(+) 29141454-29139726(-) 29139995-29141412(-) |
| Potential amino acid sequence |
MSPDQAMCKQKVQLPLYQQPQMHVLLLQQLLQEISQHLQQPQQPHHPSLMVMVVLEQEFLLVDD FLQIQQAKPEL*(+) MGVALSVCTLPGQVTSDRLGPKQMELGLGIHGEPGVAVVELQPIDVVVEHVLKQILSQETQYLP ITRGSNVVLLINGLGATPIMELMIAARKAVPELQLEYGIAVDRVYTGTLMTSLDMAGFSITIMR SDENILQRLDAPTKAPAWPVGSEGNRPPAKIPVPVPPSPSGKDDEVAGAAADAGLSLAEVAAEA KHASEVVGTMGVALSVCTLPGQVTSDRLGPKQMELGLGIHGEPGVAVVELQPIDVVVEHVLKQI LSQETQYLPITRGSNVVLLINGLGATPIMELMIAARKAVPELQLEYGIAVDRVYTGTLMTSLDM AGFSITIMRSDENILQRLDAPTKAPAWPVGSEGNRPPAKIPVPVPPSPSGKDDEVAGAAADAGL SLAEVAAEAKHASEVVGTMGVALSVCTLPGQVTSDRLGPKQMELGLGIHGEPGVAVVELQPIDV VVEHVLKQILSQETQYLPITRGSNVVLLINGLGATPIMELMIAARKAVPELQLEYGIAVDRVYT GTLMTSLDMAGFSITIMRSDENILQRLDAPTKAPAWPVGSEGNRPPAKIPVPVPPSPSGKDDEV AGAAADAGLSLAEVAAEAKHASEVVGTMGVALSVCTLPGQVTSDRLGPKQMELGLGIHGEPGVA VVELQPIDVVVEHVLKQILSQETQYLPITRGSNVVLLINGLGATPIMELMIAARKAVPELQLEY GIAVDRVYTGTLMTSLDMAGFSITIMRSDENILQRLDAPTKAPAWPVGSEGNRPPAKIPVPVPP SPSGKDDE(-) MKTFCSDLMLQLKLRLGLLDLKEIVHQQKFLFQYHHHHQGRMMRLLGLLQMLAYLLQKLLQKQN MHLRLLVQWELHFLFAHCLVR*(-) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Ye et al., 2015 |