Detail information of Os03g0719300_circ_g.7


General Information
CircRNA Name Os03g0719300_circ_g.7
ID in PlantcircBase osa_circ_021329
Alias Os_ciR8786
Organism Oryza sativa
Position chr3: 29139724-29141536  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method find_circ
Parent gene Os03g0719300
Parent gene annotation Similar to Dihydroxyacetone/glycerone kinase-like protein. (Os03
t0719300-01);Similar to Dihydroxyacetone kinase-like protein. (O
s03t0719300-02)
Parent gene strand -
Alternative splicing Os03g0719300_circ_g.3 Os03g0719300_circ_g.4 Os03g0719300_circ_g.5 Os03g0719300_circ_g.6 Os03g0719300_circ_g.8 Os03g0719300_circ_g.9 Os03g0719300_circ_g.10 Os03g0719300_circ_g.11 Os03g0719300_circ_g.12 Os03g0719300_circ_g.13 Os03g0719300_circ_g.14 Os03g0719300_circ_g.15
Support reads 2
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os03t0719300-01:6
Os03t0719300-02:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAAGTGCAACTCCCATTGTACCAACAACCTCAGATGCATGTTTTGCTTCTGCAGCAACTTCTGC
AAGAGATAAGCCAGCATCTGCAGCAGCCCCAGCAACctcatcatccttccctgatggtgatggt
ggtactggaacaggaatttttgctggtggacgatttcctgaatcaacaataaatttagaaatct
gatgattc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 603
Transcript exons: 29139724-29139788,29139928-29140020,29140338-29140468,29
140673-29140728,29141110-29141193,29141363-29141536
CTCATCATCCTTCCCTGATGGTGATGGTGGTACTGGAACAGGAATTTTTGCTGGTGGACGATTT
CCTTCAGATCCAACAGGCCAAGCCGGAGCTTTAGTTGGAGCATCAAGTCGCTGCAAAATGTTTT
CATCTGATCTCATAATAGTGATAGAGAACCCAGCCATATCAAGTGAAGTCATAAGTGTGCCAGT
GTAGACTCTGTCAACAGCAATCCCATACTCCAATTGTAATTCAGGAACTGCTTTTCTTGCTGCA
ATCATAAGTTCCATGATAGGAGTTGCACCCAATCCATTGATTAGGAGGACAACATTGCTCCCTC
TTGTGATAGGAAGATACTGAGTTTCCTGTGACAATATCTGCTTAAGAACATGTTCTACTACTAC
ATCAATGGGCTGGAGCTCAACAACAGCAACACCAGGTTCTCCATGAATTCCAAGGCCAAGCTCC
ATTTGCTTAGGACCCAAGCGATCAGATGTCACCTGACCAGGCAATGTGCAAACAGAAAGTGCAA
CTCCCATTGTACCAACAACCTCAGATGCATGTTTTGCTTCTGCAGCAACTTCTGCAAGAGATAA
GCCAGCATCTGCAGCAGCCCCAGCAAC

Transcript length: 976
Transcript exons: 29139724-29139788,29139928-29140020,29140338-29140728,29
141110-29141536
CTCATCATCCTTCCCTGATGGTGATGGTGGTACTGGAACAGGAATTTTTGCTGGTGGACGATTT
CCTTCAGATCCAACAGGCCAAGCCGGAGCTTTAGTTGGAGCATCAAGTCGCTGCAAAATGTTTT
CATCTGATCTCATAATAGTGATAGAGAACCCAGCCATATCAAGTGAAGTCATAAGTGTGCCAGT
GTAGACTCTGTCAACAGCAATCCCATACTCCAATTGTAATTCAGGAACTGCTTTTCTTGCTGCA
ATCATAAGTTCCATGATAGGAGTTGCACCCAATCTGCATTTCAAAGATGGGATCAAACGATCAG
GTAATACTACAGTGTAAGGCAACTGCTCATCATAGGTCAGAATGTTGGACCAAGATACCAAAAG
TAAAAGGCTTTTTTTACCTTCCCTGTGAAACTAAATGCTGATAAAGTAAGCAAACCATATGATA
ATCATTGAGATATGGTGAAACGAAAATTCTAAGATCTTTAGTTACCCATTGATTAGGAGGACAA
CATTGCTCCCTCTTGTGATAGGAAGATACTGAGTTTCCTGTGACAATATCTGCTTAAGAACATG
TTCTACTACTACATCAATGGGCTGGAGCTCAACAACAGCAACACCAGGTTCTCCATGCTGCGGA
ACAAAAAACGTGTTTCATATTTGGGGAACATGCAAATTTACAGCACTCAGCATGGAAATGATCA
GATACAAAGGCACAAAAACTAATAAGTAAACTAAATTCAAGTAATGACAATTATTTCTGTGCTT
AATGAGAATAATAACTGACAAGGTTTAATCTTACAATTCCAAGGCCAAGCTCCATTTGCTTAGG
ACCCAAGCGATCAGATGTCACCTGACCAGGCAATGTGCAAACAGAAAGTGCAACTCCCATTGTA
CCAACAACCTCAGATGCATGTTTTGCTTCTGCAGCAACTTCTGCAAGAGATAAGCCAGCATCTG
CAGCAGCCCCAGCAAC

Genomic sequence CTCATCATCCTTCCCTGATGGTGATGGTGGTACTGGAACAGGAATTTTTGCTGGTGGACGATTT
CCTGAATCAACAATAAATTTAGAAATCTGATGATTCAGCAGAAAACGTGTGATAAGGGAAACTA
TTCTGGGCTTGTATACAGGTAAACAGACTAACAATCACATATGAAAAGCAAAAACTTCTGCCAG
AAAGAACATTACCTTCAGATCCAACAGGCCAAGCCGGAGCTTTAGTTGGAGCATCAAGTCGCTG
CAAAATGTTTTCATCTGATCTCATAATAGTGATAGAGAACCCTGCAAGTCAAAACAGGATACTT
GCATAAGAATGCAAATTAACCATAACTCTAAGCTTATATAGTGTATAGACGACAGAAAGGTATA
TATATAAACATCATGTTGAAGGGAGAACAAGGTTATATGTTAACCAGAAAAGATTCGTGAGATT
TGGTCAAACAAATCCATACTATTTTTATTGATGCAACCATCACAGATCATCATAATTTAATGCA
TTTTCACTGGACATGTTCCCAACTAATTTATGCTGAGAAATGTTTATACACCCTTGACAGAAGC
TCTGATTATCTTATGGAGATATAAATGGTAGAACTGACCAGCCATATCAAGTGAAGTCATAAGT
GTGCCAGTGTAGACTCTGTCAACAGCAATCCCATACTCCAATTGTAATTCAGGAACTGCTTTTC
TTGCTGCAATCATAAGTTCCATGATAGGAGTTGCACCCAATCTGCATTTCAAAGATGGGATCAA
ACGATCAGGTAATACTACAGTGTAAGGCAACTGCTCATCATAGGTCAGAATGTTGGACCAAGAT
ACCAAAAGTAAAAGGCTTTTTTTACCTTCCCTGTGAAACTAAATGCTGATAAAGTAAGCAAACC
ATATGATAATCATTGAGATATGGTGAAACGAAAATTCTAAGATCTTTAGTTACCCATTGATTAG
GAGGACAACATTGCTCCCTCTTGTGATAGGAAGATACTGAGTTTCCTGGAAGGATGCATTGCCA
TCACATAAACAATAAAATGCATCTATAACTAAACAGTGCAAACAAAAATGTATGGATTTCATGA
ACAGCAGAAAATATGGATCCATGGTACTGAAATGAAATGGACAAAATGACCCACAAAAATCCTG
CTAACAACTTTAAATGTTTGAGGTTTCAACTGCAAGCTTTGCTATTCAAGCTAAACTAAAAAAA
AAAACCATCCTTTATGAAGAATGGAAAACATGGATTCAAGGTACTCAAATAAAATGGATTAAAT
TAGTAAAACGGATGCTAATGGTAACTAAAATGCTTGCGGGTTCAACTGAACGAGAAATGGAGAA
ACATAAAAAGCCTAGAAAAAAAATAGCATATCAAAAACATACCTGTGACAATATCTGCTTAAGA
ACATGTTCTACTACTACATCAATGGGCTGGAGCTCAACAACAGCAACACCAGGTTCTCCATGCT
GCGGAACAAAAAACGTGTTTCATATTTGGGGAACATGCAAATTTACAGCACTCAGCATGGAAAT
GATCAGATACAAAGGCACAAAAACTAATAAGTAAACTAAATTCAAGTAATGACAATTATTTCTG
TGCTTAATGAGAATAATAACTGACAAGGTTTAATCTTACAATTCCAAGGCCAAGCTCCATTTGC
TTAGGACCCAAGCGATCAGATGTCACCTGACCAGGCAATGTGCAAACAGAAAGTGCAACTCCCA
TTGTACCAACAACCTCAGATGCATGTTTTGCTTCTGCAGCAACTTCTGCAAGAGATAAGCCAGC
ATCTGCAGCAGCCCCAGCAAC
Conservation Information
Conserved circRNAs NA
PMCS 0.24289374
Functional Information
Coding potential Y
Potential coding position 29141408-29139957(+)
29141454-29139726(-)
29139995-29141412(-)
Potential amino acid sequence MSPDQAMCKQKVQLPLYQQPQMHVLLLQQLLQEISQHLQQPQQPHHPSLMVMVVLEQEFLLVDD
FLQIQQAKPEL*(+)
MGVALSVCTLPGQVTSDRLGPKQMELGLGIHGEPGVAVVELQPIDVVVEHVLKQILSQETQYLP
ITRGSNVVLLINGLGATPIMELMIAARKAVPELQLEYGIAVDRVYTGTLMTSLDMAGFSITIMR
SDENILQRLDAPTKAPAWPVGSEGNRPPAKIPVPVPPSPSGKDDEVAGAAADAGLSLAEVAAEA
KHASEVVGTMGVALSVCTLPGQVTSDRLGPKQMELGLGIHGEPGVAVVELQPIDVVVEHVLKQI
LSQETQYLPITRGSNVVLLINGLGATPIMELMIAARKAVPELQLEYGIAVDRVYTGTLMTSLDM
AGFSITIMRSDENILQRLDAPTKAPAWPVGSEGNRPPAKIPVPVPPSPSGKDDEVAGAAADAGL
SLAEVAAEAKHASEVVGTMGVALSVCTLPGQVTSDRLGPKQMELGLGIHGEPGVAVVELQPIDV
VVEHVLKQILSQETQYLPITRGSNVVLLINGLGATPIMELMIAARKAVPELQLEYGIAVDRVYT
GTLMTSLDMAGFSITIMRSDENILQRLDAPTKAPAWPVGSEGNRPPAKIPVPVPPSPSGKDDEV
AGAAADAGLSLAEVAAEAKHASEVVGTMGVALSVCTLPGQVTSDRLGPKQMELGLGIHGEPGVA
VVELQPIDVVVEHVLKQILSQETQYLPITRGSNVVLLINGLGATPIMELMIAARKAVPELQLEY
GIAVDRVYTGTLMTSLDMAGFSITIMRSDENILQRLDAPTKAPAWPVGSEGNRPPAKIPVPVPP
SPSGKDDE(-)
MKTFCSDLMLQLKLRLGLLDLKEIVHQQKFLFQYHHHHQGRMMRLLGLLQMLAYLLQKLLQKQN
MHLRLLVQWELHFLFAHCLVR*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015