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circRNA ID
AT1G01700_circ_g.1
Alias
ath_circ_000108
Organism
Arabidpsis thaliana
Position
chr1: 260118-260417  JBrowse»
Reference genome
TAIR10.38
Type  
e-circRNA
Identification method
PcircRNA_finder, circRNA_finder, find_circ
Parent gene
Parent gene annotation
RHO guanyl-nucleotide exchange factor 2
Parent gene strand
-
Alternative splicing
NA
Splice junction sequence  
CTTTCCTGAATGATCCAGTTGCGGAACGCGTTGACTTCATCGACAAGCTTCCTTCTTCTGCATA
CCAAAACTCTGTCTTTTGAAAACTATCCAATGCCTCctttggaagagttgccatgtaagaatca
ggaatatccatttcaccgagtatgctgctattgatggccatagcagctttatggatttgattag
tgctctct
Support reads
2
Tissues
whole_plant
Exon boundary  
Yes-Yes
Splicing signals  
CT-AC
Sanger sequencing for BSS  
NA
PCR primers for BSS  
NA
Assembled circRNA sequence  
NA
Sanger sequencing for FL  
NA
PCR primers for FL  
NA
Genomic sequence
CTTTGGAAGAGTTGCCATGTAAGAATCAGGAATATCCATTTCACCGAGTATGCTGCTATTGATG
GCCATAGCAGCTTTATGGATTTGATTAGTGCTCTCTCGCTTGCTCTTAAGTTGTTTCCTTGCCT
TCTCTGATAAACCTTGTAATGGAACCAGAGGAATCGGTAACCACCATTTCTCTTCTTTCCTCTG
CACAATCACTTTCCTGAATGATCCAGTTGCGGAACGCGTTGACTTCATCGACAAGCTTCCTTCT
TCTGCATACCAAAACTCTGTCTTTTGAAAACTATCCAATGCCTC
Number of exons covered
AT1G01700.5:1
AT1G01700.4:1
AT1G01700.1:1
AT1G01700.3:1
AT1G01700.2:1
Conserved circRNAs
NA
Coding potential
Y
Potential coding position
260358-260120(-)
Potential amino acid sequence
MKSTRSATGSFRKVIVQRKEEKWWLPIPLVPLQGLSEKARKQLKSKRESTNQIHKAAMAINSSI
LGEMDIPDSYMATLPKEALDSFQKTEFWYAEEGSLSMKSTRSATGSFRKVIVQRKEEKWWLPIP
LVPLQGLSEKARKQLKSKRESTNQIHKAAMAINSSILGEMDIPDSYMATLPKEALDSFQKTEFW
YAEEGSLSMKSTRSATGSFRKVIVQRKEEKWWLPIPLVPLQGLSEKARKQLKSKRESTNQIHKA
AMAINSSILGEMDIPDSYMATLPKEALDSFQKTEFWYAEEGSLSMKSTRSATGSFRKVIVQRKE
EKWWLPIPLVPLQGLSEKARKQLKSKRESTNQIHKAAMAINSSILGEMDIPDSYMATLPK(-)
Sponge-miRNAs
NA
circRNA-miRNA-mRNA network
References
Chu et al., 2017

Copyright©2017-2021 Institute of Crop Sciences / Institute of Bioinformatics, Zhejiang University.
Any questions or suggestions, please contact the Fan's lab, bioinplant@zju.edu.cn
For submittion, please click here. Last modified at 2021-03-09.

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