Detail information of BGIOSGA001905_circ_igg.1


General Information
CircRNA Name BGIOSGA001905_circ_igg.1
ID in PlantcircBase osi_circ_008910
Alias Chr01:9595438_9597942(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr1: 10557431-10559388  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-NN
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAGTCAACTCACAAAGATTAAAACATTAATTAATAGCCAAATTAAGAGCGTAGTACACTTACCG
ACTAACTCCCCAAAGCTGTCAAAGCGCTGCCCTATCtggttggcaagtagaaaatctaccacag
gaccaggtttcacaatcatcgttgtggacacatctgcacaagttaaagcagcaacatgcaaaca
tgtattat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TGGTTGGCAAGTAGAAAATCTACCACAGGACCAGGTTTCACAATCATCGTTGTGGACACATCTG
CACAAGTTAAAGCAGCAACATGCAAACATGTATTATCAGCTACAGCGTGCATGTGACCACATAC
AAAATATGAAATTGGGCCATAATAGCAATCGTTTACCGATATTGAGTGAAAGTCCACTCTGTGT
AGCTCGGAAGCTTGAATGGAATCCCCTACAGCCCATCACACCACCACCCAAGTCAACAAAATTT
GAAGGATTGTTATGGAAAAAGGATTGGCGAACCAAAAGGCAACCCCTGCATAAAAAAAGGAAAA
GTTAAGAACAAATGCAAATCAGCCATGATGTTAAACATTCTAAACAATATAGCTAGAATATTTG
CAAAGTAGGGGCTTCCAAAAGATATGGAAACATACTGTTTTGCGGAATGCTGTCTTAATATGAT
ATCAATAACACGAATTGCTTCTTGGGTGTTTTCAGATTCCTGGCCTCTCAAGGCCTGAGCAATG
GCGCTCATAGGAATTTTTGCTGCAAAGTTCAGCTCAACTTTAAAAGTTTTCGTCTGGTATGACC
TTCTAACCCTTTTCCTGTCATTTCCTGGACTGTCATTGCCAGGGCTACCACCATTTGCAGATGA
CCTAATAGCATTGGAAGTTATGTGAGCAAAGGGAAAGAAGTAAAAAAAAATGTTGGCATCATTG
AAAGTAGCAGAAAGAATTGAGATAGATAATTACTTTCCAGTGTTGAAGTCTTCCAGAACTACCG
TGAACTCATTGTTCACTTGAGGAAGAGCACCAATGGTGAACAGGCTCTTCTCACCATCGTATGC
AAAATCTTTATTTGCCAGCTCAGACGCATAGGTCTGCTGGAGTTTGTCCAGCACCTTTCTACCT
ATGCCCTTTCCATCCACTGGTCTATCATCCTCATACTTCAGATTAACCTGTGTAACTCAAGCAG
TAGTGGCAATCAGACATGAACAAAAGGAACTCAAAGAAGAAAAATAAAGAACTGTTACAAGGGC
TAGAGACGAACATAGTAGTGATGGAAAAATTCGTCTGCTGCCTTCAGTGAAACCTTGAAGTGGT
TCGTCAGCAGCTGTATCGGCTGCCCTTTTTTGCCACAACCAGAGCGAGCCATCAAGGCCCTCTT
AGGTTTTGATAACTTTTTTGTATCATCAGTTTTAATTGGCTCAGCATTTGGTGGCAAAGGTGGG
GGAGGTGGCAACTCCTCGATTTCACCACTGTTGGACTCCATGTGCACACTTCTCTGAAATAGAG
CATAAAAGCCAACTAAATAAACACTTCTCTCAGACTAGAATATAACAAGTTAAATCAATCTTCA
AAACTAGAATCATACAGAAAACCCCTAGGTCTCACTAATATATTTTGCATGCAAATGAAATCGA
AAAATACAAGAAAATTATTATGACACCACAAGGTTTAAAACATTCAACTAAAAGCATAATATAG
TAATATGCTAACACAAACGTTATGTCAGTCAGTCTGCCATGTTGCATATGCACACAAAAGAACA
CACAACAAACGTTTCAAGTCACCGTTCAAGTCCAAACTCTTATCACACCTACATGAGTTTGCCA
GTACACTTTAAATACACTGTCATACTGAGAATGACCTGAGGTTACTACTACTTCGAGGGTCAAC
CGGTGCCAAAACAACTAAGCTTCTTGTTTGCCATCTACATTAAAATGGTACTCCAGTTTTTAAC
AATGTATTCAAAGACACTAATCGTTTGTCAGACGATTGCAACATTAACAAGAAAGCCTGAGAAA
CTAGTAGTTCATGCAAAAAAAATATGTATAACTACTGAGAGTGAGACCACAACTATAGAAAATT
CCTAGTCAACTCACAAAGATTAAAACATTAATTAATAGCCAAATTAAGAGCGTAGTACACTTAC
CGACTAACTCCCCAAAGCTGTCAAAGCGCTGCCCTATC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021