Detail information of BGIOSGA020727_circ_g.1


General Information
CircRNA Name BGIOSGA020727_circ_g.1
ID in PlantcircBase osi_circ_016524
Alias Chr06:28029508_28030908(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr6: 29121553-29122953  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2
Parent gene BGIOSGA020727
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA020727-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACTTAAGCTTGAAAAAAGGTCACGTTAGCAGCATACCTCTTTAGATGCACGGAAACCTTCAAGT
TTATCGCTCACAGAAACCTCTGTAAGTTTTACATTCcagctgtgtagcaggacttctcatgctc
agagggtttgccaaaatgtacagttcttgtaatgtctgtagtaccatcaagatactgcaaacat
accaccat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAGCTGTGTAGCAGGACTTCTCATGCTCAGAGGGTTTGCCAAAATGTACAGTTCTTGTAATGTC
TGTAGTACCATCAAGATACTGCAAACATACCACCATAGAAAGAATTAGACTCAAGCAAGTCTTT
TACCACAAAATTTGAGTTTGACTGAAATGTACTCAACCTGAGCCCCAGAGTCACACAGATATAT
TTTATCAGCATCAAGTTCAGCACATGAACTTGCTTCTGGTTTATAATGAATCACTGCTGCATTT
GGTCCCACGGATGAAATCGTAGGAAAACTCAGACCTTTGAAGTGCTGCAGAAATATTACCAGTT
AGTCAAAAGATGTAGTATAGCAGGAGACTATGAACTGCAAAATGCCCTCATTTGGCTCTGTAGT
TTCTATGGCTGCGTTCGGATGAGGAGGTTCCCAACCCCTTTCCCTCGTATTTCGCGCGCACGCT
TTTCAAACTGCTAAATGGTGTGTTTTTTGCAAAAAGTTTCTATACGAAAGTTGCTTAAAAAAAT
CATATCGATCCATTTTTGAAAAAAAATTGCTAATACTTAATTAATCACGTGCTAATAGACCGCT
CCGTTTTCCGTGCACAGGATTTGGGTTCCCAACCCATGGTATCGAACACAGCCTATATTCATCT
AGCAACCAAAGAAAAGATGTTCCACGAAAACAAGTCTTTTTTTTTTGGTTACTTTGACATAAAC
ACACAGTAAGCAGAGAAAGAGGGGACGACTCAAGACCCTCAATGTCCTGATTCCTGAATGAAGA
GCTCAGAGCGAAGTCAGTGAATGTAGAATTTTTTGTGCAAAAAATAGGCCTTATTTTTGGACTG
CTTACGCAAAAGATTTATGCATTCACTCTGGGCTCTGCACTGAGATTGAGGAGCCTCTGATGGT
TCCCTCTATCTCCACTTACCATGTGTTTACGTGATAGTAATAATACATATAATGTCATCCAGAG
AGTATTCTTTTATTTAAAAAATATGCTTACAAAGAACAGTAAAAACTTCCTCTCAAAAATTGCA
CAAGAAATACAAAATAGTTAGTATAGTAGAATTTTTTCCATTGTCTCTTTAACGGATACAAATG
AAACCGATGGGCCTTGGCTATATCAGTTCCAAAGTTTCAATGGATATTTGGGGTTGCTACAACA
AAGTCATAGGTAAGTATGAGGAACTTGTTTATTTTAACAATTTCCATAATACCAAAAGTGCACT
TACTGGCTTTTGACTTTTAAAAATGGTAATGGCAGTAACTATAGCTGTTTATGGCAGTTATAAA
AGATCTCTAGTAATATAGTATACTTAAGCTTGAAAAAAGGTCACGTTAGCAGCATACCTCTTTA
GATGCACGGAAACCTTCAAGTTTATCGCTCACAGAAACCTCTGTAAGTTTTACATTC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021