Detail information of Chr4_circ_ig.45


General Information
CircRNA Name Chr4_circ_ig.45
ID in PlantcircBase csa_circ_002528
Alias Chr4:10232775_10237471
Organism Cucumis sativus
Position chrChr4: 10232775-10237471  JBrowse»
Reference genome Cucumis sativus v1.5
Type   ag-circRNA
Identification method Find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGAACAAATTGCACTCTCTTGGTCCCTAAGCTACTTTTTTCTACTTAGAATGTTGTTCAGAACC
ATTAAGATCTTTTGTCTTCTCGCTTTCTTTACACAGgttgatgaggagttgaacaacatatcat
ggaaagcaattgactacccaggaagtgaccctcaattcaaacctccatccaacctaaaagaaaa
agacagta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTGATGAGGAGTTGAACAACATATCATGGAAAGCAATTGACTACCCAGGAAGTGACCCTCAAT
TCAAACCTCCATCCAACCTAAAAGAAAAAGACAGTAAATCAAAAGAAGTTGATGAAGGCGAAGA
AGCTGAAGAGCTTTATGGGCCTCTTTTCAAAGGCATTGTCAATCTACAACACCAACAACAGATA
CAAGTAGCTGTAGGAGCCCTTAGAAAATTTGGATTTCCAGTCACTCTTCTTTCCCCAACCACCA
AGCCTCCCAACCCTTCAATGATCATCAAGTGCGATGCAGTGGTGGTCGGGTCCGGGTCAGGCGG
CGGAGTGATAGCTGGGGTGTTGGCTAATGCAGGGTACAAAGTGCTTGTATTAGAGAAAGGAAGC
TATTGTGCTAGAACAAACCTGTCACTCCTAGAAGGGCCAGCCATGGAAGAAATGTATCAATCAA
GTGGTTTGGTGGCAACTGATAATATGAATGTGCTTATACTTGCAGGCTCTACTGTTGGTGGAGG
GTCAACAGTAAATTGGTCAGCTTCTATTGAAACACCAAGTCATATAACTAGAGAATGGTCAGAT
GAGTATGAATTGGAGTTGTTTAGAAGCAATTTATACAAAGAAGCAATTGATGTAGTGTGTAAGA
AAATGGGAGTTCAATCAAAAATTGACAATGAAGGGTTTAACAATGCAGTTTTAAGAAAAGGGTG
TGAGGAATTGGGTGGTCATGCTATCACTATTCCTAGAAATTCAACTTCTGATCATTACTGTGGT
TGGTGCTGTCTAGGATGCAGGGATGGAAGAAAGAAGGGGACTGCAGAGACATGGCTTGTGGACT
TGGTAAGGTCGGGAAATGGCGTTATACTTCCAGGCTGCGAAGCCATTAAAATCAGACAGGAGAA
GGAACATGGGAGAGAACGTAAGAGGGCAAAAGGCGTTGCATTTGAATTCTGGTGTGGATCAGCA
GCCAAACAGATGTGCTTGGTTGAGTCCAAGGTGACTATAGTGGCATGTGGGGCTCTTAATACTC
CTCCATTGTTGAAAAGAAGTGGGTTGAGAAACCCAAATATTGGAAAAAACTTGCATCTTCATCC
TGTAACAATGGCATGGGGTTATTTTCCTGCAGAAACTGGTATGTGATAACTCACATACTATCAT
ATTTCTACCAAAAAGGTAACACGGCACAAACGAATCACAGTAGCATATCACCAACAATATTTGG
GTAGCTCACTCCAACCAAAGGATTTTAGAAAAGGAAGAGTTTGTCATGTGACAAACTGTGGTTA
GATGAAAGAGGAGTGGGCTACAAAAAGAGGAGTGCTAAGTGCCATGTCTTTTTAGAAAAAAGTG
GAAGAAACTCAGTCAAATGCTTCTCTAAAAGCATTCTAGTTTTGCTTTGTTTGTAGAAGTAGAA
ATAATCAAATCTTAGCCAAATAACACTCTTTTTACCATTTTTCAAAACTTCAACCAAACACTGT
CCAGTGGTGTTTGAAAAAGGAAAATACACTTTTAGCCATCCATACCATGTGCATTTAAAAGGAT
TCAGGAGTAAAGCACACACACTCAAATTCACTTGTGGACATCATCTTTCCTAACCAAACATTTG
CTAAGATGTCGTCTCACCCTTTTCTGTGTAAAAATAGACTACACTTTTCCCAGCGTCTTCAAAA
ACATCGCGAAAACGGACTTTTCGTGACGTCAACAACTATGGACGTCGTAGAAAGTTAAAATAAC
GATTATTTTATTGTTACTTTCCACGACGTCGTTCCCCACCACGTCTCGGATTATGGTAACCTTC
CGCAACGTCAACCACTAAATGTCGTAGAAAGTGAAATATTGAATTTATTATTTCATCTACTAAA
CATCGCGAAAAGTCGAAACATGGTGTTTCAAATTCAATTTTCCACGATGTTTCTCGAGCACACG
CCGCGAAAAGTTGAAAATAATAATTTTACTATTCAACTTTCCGCGACGTGTAGTACTTGACGTC
GCCGAAAGTCCCATTTGAAATGGAACATTTCGACTTTCCACGACGTCTCTCGAAAGTATGTTGT
GGAAAGGTGAAATAACAAAATAAATATTAAGCCTTCAACGACGTGATGTTCTCAAACGTCGCGG
AAAGGACCGTATTGTGACTAATTGTTGTACACGTCGGCAAAAGATGATTAACGTCAACATTGGT
TTTAACGACGTCGTTTCAAACGTCGCGATAGGTTCGATTTCTTGGGGTGGTTGTAAGGCTCCAA
ACTAATTATGGATCCAACCCTAAAATATGAATAACGTACAGTGAACATTAAATAATCATAAGAT
GATTAAAGAACTTTGTCAAGAAACGAAATAAATTCGACTTCCAAACCTCCGTATTCAAACATAT
GATTCTGGCTAAAAGTATGCCACGTGTCTTCCTTTTAAGAAATTATTTTGCTTATTTATTAAAA
GAAATTGAAAAGAATAATAATAACATAAAATATATTCTGAGTGTCCTTTTTTTTCATTTTGAAA
AAATTCTATGAGCGAACCTGGAAAGCGACCAAACCAAAATATGGGACATTTCTGTGCGGCGGTG
ATTGGCGGCGGCGGCGGCGGTGACGACGGGGAAACAAATCACCAACCCCACCAACACTGCGTGA
TAGAGCTCCACGGCGGTGCCGACAGCTTCCACGACGGAGCATCGGTAGAAATTTCACAACATGC
AAACTCCAATAATGACTACTACTCCTCCGCCGGCCACCTCTCCGCCTCGGAAATGGAGTCTCTT
GCTGCTCTATGCGATACATTTTTACCGTCCGTCGCTCCATCCACCGCTGCAGATAGATCCACTG
CCTTTTTCTTTGAGACCTCCGCATCTGCTATTGGAACTCCTGACAGAGTAAGTTGAAAAATATC
ATTTTTTTTCTTTATACTTTAAATTATTATATATATATATATAATAATTAACTTACCATTATTA
GTTGAATAATCTATATTTTCAAAACAAAATATACTTTGTATGTTGATGCATGCAAGTATATATA
CAAGTAGAAAGAAAAAAATTTAACCATTGACCATGGTTAATCATATAAAAAAATAAAATTTGGA
AGGTCGGATTTGTTAACAATTTTTGTCTTTGATTTTCTTTTTTTCAAATTTACGCTTTTCTCGA
TTTCTTTATTAACATCTAAATTCTTTGTCTTTTTTTTTTTTTTTGTATTTTAAAAACTTATTTA
TTTTACATTCCAAAATCTTAGTCTGATTTTTTCAACTTATTTTTAGAAAATCAAGAAAAATATC
AAGCTTTGCATGGTAACATTAGACTGTGCTTGACAACATTTTTTTTTTTTTTTGTTTTTTTGTT
TTTTTGAAACTTTTATTCAATATTTCAAAATATTTGAACTACTTTTAGTTAACTTTTTTATAAA
AAATTATATTAACTTTTTTTCTTTTTCTTAAGAAAAAAATCAATGATCTTCAAATAATTAGTTA
ACTTAGTATCTAAAATTTGTACATAACCGGGTGTTCAACCTTAGATCAAAACAAAGTTTATGGT
GAAGTTTATGGGGCATTTGGATCAGGTTTCTAATATTTAGGATTTATATAAAAAAAAAAAATAG
AACCATTTTTGTCCAAACATACACTTAAAAAGAATGAATTATTTTTAAAATAATAGATTTTAAG
AATATTTAGAACTTATAGCAAATTTTATAACTGACAGTCAATAATATAATATGCTATAGTGATG
AAAGAATATAAGTGATAGATTCAAAAATTTTGTTGTAATCTGTAAATATTTTAATTTATTTGTG
CTATTTTTAAAAATATCTCTAAAATGAACTCGAAGTAAATAGTAAGAATAAGAATATATTGTAT
GCTTTTTTTTTTTAATTTTTCAGAATAAAAGAGTTAGAATTTCGAAAGGAAATTTTGTGATTGG
ACTTGACAGCAATAAATTCTTCCTACCATCTAACTATTGTACTACCTCAAAAATAGAAAAAGCA
AAAAAAAGTAAAGATTTTTTATTTAGAAAAAGAAACTTTCTATTTGTTACAAAATGTGGTTTCT
CTTCTCTCTCTATTCATCACCACATTATAGTTCTTACTTCCTAATTAGTAAAAGAAATAGTCGC
TCTCCTAATTTACTTTCTTTTCATACTACCTACCTATATTTAGGGCTAATTGTTTGAAACTCTG
AACCTAGTTCGAACTGTTATTTTATCCGGTGCTTATTAAACATCATGCAAATTCATTACCTAAC
TATGATTGTGAGACAAATATTATTTTGTAGTGATCTCATTAAATAACTCTTTTCTACTCTTGAT
GTTGTATAAAATAGAAAAGAAAAAAAAAAGAAAAACCCAACTTCTTAGTAATAGGTCTATATTT
AATATGTAACAATTTAGTCTCTCAATTTTTAAAAACATTTTAAAGTTGGAATGTAATATTTTGA
TATATATGTAGGTAGGGGAGATGATAAAGGAGAGAGTTAAACATCCAAAGAAATGGCTAGTGAG
AGTTACTCTATGGTTGTTATCAACATGGTATGGGACATACATTCTATGTGGTAATAAAAGCCTT
TCAAACCATTTCCCATACTTTGAGAGATTTTCAAAAGTTCCTCAAAAGAAAAGAGAACAAATTG
CACTCTCTTGGTCCCTAAGCTACTTTTTTCTACTTAGAATGTTGTTCAGAACCATTAAGATCTT
TTGTCTTCTCGCTTTCTTTACACAG
Conservation Information
Conserved circRNAs NA
PMCS 0.095020109
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References He et al., 2020