| CircRNA Name |
AT1G68010_circ_g.13 |
| ID in PlantcircBase |
ath_circ_009156 |
| Alias |
Ath_circ_FC0021, Ath_circ_FC5243, AT1G68010_C1 |
| Organism |
Arabidpsis thaliana |
| Position |
chr1: 25494908-25495509 JBrowse» |
| Reference genome |
TAIR10.38 |
| Type |
e-circRNA
|
| Identification method |
CIRCexplorer, KNIFE, PcircRNA_finder, circRNA_finder, find_circ, CIRI-full, CIRI2 |
| Parent gene |
AT1G68010 |
| Parent gene annotation |
hydroxypyruvate reductase
|
| Parent gene strand |
+ |
| Alternative splicing |
AT1G68010_circ_g.2 AT1G68010_circ_g.3 AT1G68010_circ_g.4 AT1G68010_circ_g.5 AT1G68010_circ_g.6 AT1G68010_circ_g.7 AT1G68010_circ_g.8 AT1G68010_circ_g.9 AT1G68010_circ_g.10 AT1G68010_circ_g.11 AT1G68010_circ_g.12 AT1G68010_circ_g.14 AT1G68010_circ_g.15 |
| Support reads |
24/6 |
| Tissues |
aerial, whole_plant/seedlings, leaf |
| Exon boundary |
Yes-Yes
"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
|
| Splicing signals |
GT-AG
The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
|
| Number of exons covered |
AT1G68010.2:4
AT1G68010.3:3
AT1G68010.1:4
|
