Plant Circular RNA Database

Detail information of Os07g0660200_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os07g0660200_circ_g.1
					
						ID in PlantcircBase
						osa_circ_035150
					
						Alias
						Os_ciR4981
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr7: 27827220-27830819  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer, find_circ
					
						Parent gene
						
							Os07g0660200						
					
						Parent gene annotation
						
							Similar to chromatin remodeling complex subunit. (Os07t0660200-0
1);Hypothetical conserved gene. (Os07t0660200-02)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os07g0660200_circ_g.2 Os07g0660200_circ_g.3 						
					
						Support reads
						4/2
					
						Tissues
						root/root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os07t0660200-02:5
Os07t0660200-01:8

General Information
CircRNA Name	Os07g0660200_circ_g.1
ID in PlantcircBase	osa_circ_035150
Alias	Os_ciR4981
Organism	Oryza sativa
Position	chr7: 27827220-27830819 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer, find_circ
Parent gene	Os07g0660200
Parent gene annotation	Similar to chromatin remodeling complex subunit. (Os07t0660200-0 1);Hypothetical conserved gene. (Os07t0660200-02)
Parent gene strand	-
Alternative splicing	Os07g0660200_circ_g.2 Os07g0660200_circ_g.3
Support reads	4/2
Tissues	root/root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os07t0660200-02:5 Os07t0660200-01:8

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							AGAAACTTACCTTGTCAAACATGGAACCACCTTTTTTTGATTCTTTCTTCTCGAGCCTGCCCTC
AGCATTTAGCTTCTGAATCACTAGGTGATCAAGAACcttttcctttggcagatttacactagta
ttctgaagcctatccagccgctttaatatctcctgctcgtcatccaaaacttcagaacaccatt
ccagccac

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CTTTTCCTTTGGCAGATTTACACTAGTATTCTGAAGCCTATCCAGCCGCTTTAATATCTCCTGC
TCGTCATCCAAAACTTCAGAACACCATTCCAGCCACTTTTCTTCCTTGTCCTGACGATATTTAG
TCTCTGCTTCAGATTCTGAAATTTCACCTTCTTCCCTTGCTTCAGGTTCCACCACCTTGCGTTT
CTTAAAGTCATCTTTAATTGAATTATTATCTTCTTTTATTTTTGTGTCTTTTTGCCGGCCTCTT
AATGAACGAGCTCCACCATTGCTTTCATTATCAATTGCTTGACGAGGACCTCCCTTGGCTTTCG
AGCTCTTACCACGAAGATTGGCAAATTCCTGGATAAGTAAAATTACGTGTCAATCAAAAGCTGA
ACACATGTGGGATCTACTACTTCTGATTAAGTAAAATATTGAATAAATATCATAAAATTCCATG
TACTTACCAAAAACATAACCACCCGACCAGGTTTAGATTTTTATTTTTTGCACAGAACCACAAG
GAGACAAACAATTTAACAAAAACAAAACACCAGGTTTTTTTGCAAAGCACGGCCCCAAACAAGG
AGATGAGCAGCCAACTGGAATGGCCAGCCCCTGACAATTTCTGCATTACAGTGGCTACTAGCTT
TCTTTTGCGGATCACATTGGCTGCATTAACAAATCATACTGATGCATGGAGCATGCATACTGGT
GTGTATATTTATATTTTCAGGAACATGACATTTTTTTCTACACAATGTCATGTTAAGCAATTGC
ATTTGTTCATTTCAAGGAAGTAATTGCATAGAGTGACAAGAGTCCACATCTACTTGCTACAAAT
CAAATTGCATGAGCACAATTGACCGAGCAAATCGTCTAGGTTGTTGGAGAAAACAAACTTCCTC
TGAGGCTCTGAGCTGTTTATAGCACAGCACCGTAGCACAAAGCTGCCGAGCTTTTGGTAAGATG
TTCTGTATAAAATACTAAAAACTGATGTTTTCTGTTAAAAAGTTGGTCTCCTGTGGTTATGTCC
AAAGAAATCTAAAAACTGTGGGTTTTTTGTCACAGTTAGCCATGATATGGGTCTTTGTGAAAAT
TACTCTAAAAAGTTGTGAACCCGCACTCATGCTGAGTGTCTAAAGAAATTCAATTCTTAACAAG
CATTTTATGCTGTAATCTGTATGAGTCATTCCAGTACACAATAAGCAAACTCTAGGTACAGTTG
TAAGTGTAAGCTTAAGATAGAGCAAGTAGGGTGGGGGAGGGGTAGGGGGAGGGGGTGCGACATG
CAGATTACCTTTTGTAGAAGAGCACTAGCACGATTATCCAAGTTCGGTGCACGCGGTAAAAACG
TCTCTCGTTCACCAAGGGTTGCTGGTGCAATTTTCGCTGTCAAGCTAAGTTTTGGATCTAATCG
TATCTTCTCCCAATTTCCATAGCCATACCAATGAATTCCAACCATCAATCTTGCATCATCAGCT
AAACAGATACAAGAATTATATGAGTATATATTTTTTTAGTAACATTTTCAACAAAGCAAAAGGT
TTGACAGCAATTACTTTCAGTCCAACCACAGCTTGCTGACCACTGTGGCTTTTTGTAAGGTGCC
TGGATCCGGTATTGTCTAACTGGATCTTTGTAACGTGCAATGCGCCTTGCCAGGAACTGTAGCT
CTTCCACACGGGCTATCAACTCATGCGCCTTAACTGCTACACCAAAAAAATCCAACACTGTGCC
CTGCATTTAAAGTACAAATAACTGAGATTAAAGGCGATGAGAAGGCAAAGGTATCCAGGTAGAG
GGAAAGTACAACGATTATACCTTGGCATCCATATTATTTTTAACAGCATCTTGACAACCCTCAA
TGAGTAGAGTAAACAGCTCAAGCTGTTGATCAACCGAAGACTTTGCTATTGCACCACCAACATC
ATCCACGATTAACCCAATTTGGCTTGGGTTTCCAAATTTTTTAACCTAAAATGTTTACTTATCG
GAGTAAGATGAAGCTGGGAAGTAATATTCAATCTACAACTTAATCATTTTGTGGAAAAAGTTGG
GTGTCTCGTAAAGTTCCCAGAAATCACAAGAGAAGAAACTTACACTACTACTACTTGATAACTT
GCAAATCTTAGTAATGCTAACTTTCAATAACTTGTCTAAGCAGAAGTTTTGCAATCTCTCACAA
ACCCAAAGCAGAAGAGATAATAACATAACAGTTTTTTTTTTCTCGAAAACGCAGGAGAGCTGCA
TTTCATTTCATTAAGGGGAAGAAAAAACAAACATAATAGCATGACTCTGGATATTGTAAATATA
AAATCGCCACATAAAAGAAAAGAATATTGAGAACGGGTGCAGATTTACCGCTCGAACAAATCGG
GTAGCATCTTTCTTTGACAAATTTCCAAATGACCATTCTCGTACTTGATGTGCTGAACCATCTA
TGAGTGGTAATGACACAGCTGTGTCCATTGTTCTGCTAGAACGCCTCCTTGGCTTTTCTTGTGC
ATCGATTCCTCGCCTTTTCCTGTTGCTATTCTTATCAAGTTGGTGATCTTCAACATAGCTCTTC
TTATTTCTTGCAGCACGAGGTGCTAAAGTCTCCTGCAGAACATATAAATACTTACTCTCTGAAT
TTTTTTGGCAGGGAACTATATGATTAAGTTACTGTCAGACAACAGCTGGACGTGGTTTTCAACT
GTGAAAAGGGCACTAACACAAAATTAGTCCAAATAAATACCTCAACCATATCTGAAGCATCTGG
TTGAATTAATCTGCTCCAGAATGTGGCATCATCCTCACCACTAGAAAAGTTGGCAACCTATCCA
CACAAAAAATAAAAAAAGAAATATGAACAGAAGTATAGAATTTAAGCATGATGTCTGAATCACA
GGTCATATGGTAGTGCACAGAACATGCCTTGAATGCACTAAGAAGTTCATTTCCTTCCTCCCCT
TCACCACCCTTTGTTTCAACTTTCTCAGCTCTCTCGAGAATTTCATCAATGTCCATGCTTTCAA
GCTTCTTCTTGGTCTCTTCATCAGTCTTATCTTCTTTGAATAACTCTTCTGCTCCAAATCTCAA
TATCGCTGAAAGTTCATTCTGGCAAAATGTATAGCTCACATCAGAAGAGCAAAACAGAAAATAC
AAGTGAGGTGACAAGCCAGATTCTATTTAATGCATTTCTCTCAGAATTTTAATTATCAGTAAAT
GCTCTTGTGTTGTAGAGAGAATTATAGCTTGGGTATCTTGAAAGAAGGCTGGTCTAGTCACATG
AGCATATATATACCACACTAGACTTACAGCCTGTATCACTAACAATCGCTTAGTTGATAAGTTA
CTGGTAGTTTTAACAATCTTTTGTAATACAATTATACAATAGATAGATTTCAAATATACAAATC
TATCTTATATACAAAAGATTGTTAAAACTACCTAAGTAATATTGTTGTACCAAACCAATATGAC
ATCCAAATCAACCCAAATACCTAAGTAAACTAAATAACTGGTGCAGAAACTTACCTTGTCAAAC
ATGGAACCACCTTTTTTTGATTCTTTCTTCTCGAGCCTGCCCTCAGCATTTAGCTTCTGAATCA
CTAGGTGATCAAGAAC
						
					

			
		

Sequences
Splice junction sequence	AGAAACTTACCTTGTCAAACATGGAACCACCTTTTTTTGATTCTTTCTTCTCGAGCCTGCCCTC AGCATTTAGCTTCTGAATCACTAGGTGATCAAGAACcttttcctttggcagatttacactagta ttctgaagcctatccagccgctttaatatctcctgctcgtcatccaaaacttcagaacaccatt ccagccac
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CTTTTCCTTTGGCAGATTTACACTAGTATTCTGAAGCCTATCCAGCCGCTTTAATATCTCCTGC TCGTCATCCAAAACTTCAGAACACCATTCCAGCCACTTTTCTTCCTTGTCCTGACGATATTTAG TCTCTGCTTCAGATTCTGAAATTTCACCTTCTTCCCTTGCTTCAGGTTCCACCACCTTGCGTTT CTTAAAGTCATCTTTAATTGAATTATTATCTTCTTTTATTTTTGTGTCTTTTTGCCGGCCTCTT AATGAACGAGCTCCACCATTGCTTTCATTATCAATTGCTTGACGAGGACCTCCCTTGGCTTTCG AGCTCTTACCACGAAGATTGGCAAATTCCTGGATAAGTAAAATTACGTGTCAATCAAAAGCTGA ACACATGTGGGATCTACTACTTCTGATTAAGTAAAATATTGAATAAATATCATAAAATTCCATG TACTTACCAAAAACATAACCACCCGACCAGGTTTAGATTTTTATTTTTTGCACAGAACCACAAG GAGACAAACAATTTAACAAAAACAAAACACCAGGTTTTTTTGCAAAGCACGGCCCCAAACAAGG AGATGAGCAGCCAACTGGAATGGCCAGCCCCTGACAATTTCTGCATTACAGTGGCTACTAGCTT TCTTTTGCGGATCACATTGGCTGCATTAACAAATCATACTGATGCATGGAGCATGCATACTGGT GTGTATATTTATATTTTCAGGAACATGACATTTTTTTCTACACAATGTCATGTTAAGCAATTGC ATTTGTTCATTTCAAGGAAGTAATTGCATAGAGTGACAAGAGTCCACATCTACTTGCTACAAAT CAAATTGCATGAGCACAATTGACCGAGCAAATCGTCTAGGTTGTTGGAGAAAACAAACTTCCTC TGAGGCTCTGAGCTGTTTATAGCACAGCACCGTAGCACAAAGCTGCCGAGCTTTTGGTAAGATG TTCTGTATAAAATACTAAAAACTGATGTTTTCTGTTAAAAAGTTGGTCTCCTGTGGTTATGTCC AAAGAAATCTAAAAACTGTGGGTTTTTTGTCACAGTTAGCCATGATATGGGTCTTTGTGAAAAT TACTCTAAAAAGTTGTGAACCCGCACTCATGCTGAGTGTCTAAAGAAATTCAATTCTTAACAAG CATTTTATGCTGTAATCTGTATGAGTCATTCCAGTACACAATAAGCAAACTCTAGGTACAGTTG TAAGTGTAAGCTTAAGATAGAGCAAGTAGGGTGGGGGAGGGGTAGGGGGAGGGGGTGCGACATG CAGATTACCTTTTGTAGAAGAGCACTAGCACGATTATCCAAGTTCGGTGCACGCGGTAAAAACG TCTCTCGTTCACCAAGGGTTGCTGGTGCAATTTTCGCTGTCAAGCTAAGTTTTGGATCTAATCG TATCTTCTCCCAATTTCCATAGCCATACCAATGAATTCCAACCATCAATCTTGCATCATCAGCT AAACAGATACAAGAATTATATGAGTATATATTTTTTTAGTAACATTTTCAACAAAGCAAAAGGT TTGACAGCAATTACTTTCAGTCCAACCACAGCTTGCTGACCACTGTGGCTTTTTGTAAGGTGCC TGGATCCGGTATTGTCTAACTGGATCTTTGTAACGTGCAATGCGCCTTGCCAGGAACTGTAGCT CTTCCACACGGGCTATCAACTCATGCGCCTTAACTGCTACACCAAAAAAATCCAACACTGTGCC CTGCATTTAAAGTACAAATAACTGAGATTAAAGGCGATGAGAAGGCAAAGGTATCCAGGTAGAG GGAAAGTACAACGATTATACCTTGGCATCCATATTATTTTTAACAGCATCTTGACAACCCTCAA TGAGTAGAGTAAACAGCTCAAGCTGTTGATCAACCGAAGACTTTGCTATTGCACCACCAACATC ATCCACGATTAACCCAATTTGGCTTGGGTTTCCAAATTTTTTAACCTAAAATGTTTACTTATCG GAGTAAGATGAAGCTGGGAAGTAATATTCAATCTACAACTTAATCATTTTGTGGAAAAAGTTGG GTGTCTCGTAAAGTTCCCAGAAATCACAAGAGAAGAAACTTACACTACTACTACTTGATAACTT GCAAATCTTAGTAATGCTAACTTTCAATAACTTGTCTAAGCAGAAGTTTTGCAATCTCTCACAA ACCCAAAGCAGAAGAGATAATAACATAACAGTTTTTTTTTTCTCGAAAACGCAGGAGAGCTGCA TTTCATTTCATTAAGGGGAAGAAAAAACAAACATAATAGCATGACTCTGGATATTGTAAATATA AAATCGCCACATAAAAGAAAAGAATATTGAGAACGGGTGCAGATTTACCGCTCGAACAAATCGG GTAGCATCTTTCTTTGACAAATTTCCAAATGACCATTCTCGTACTTGATGTGCTGAACCATCTA TGAGTGGTAATGACACAGCTGTGTCCATTGTTCTGCTAGAACGCCTCCTTGGCTTTTCTTGTGC ATCGATTCCTCGCCTTTTCCTGTTGCTATTCTTATCAAGTTGGTGATCTTCAACATAGCTCTTC TTATTTCTTGCAGCACGAGGTGCTAAAGTCTCCTGCAGAACATATAAATACTTACTCTCTGAAT TTTTTTGGCAGGGAACTATATGATTAAGTTACTGTCAGACAACAGCTGGACGTGGTTTTCAACT GTGAAAAGGGCACTAACACAAAATTAGTCCAAATAAATACCTCAACCATATCTGAAGCATCTGG TTGAATTAATCTGCTCCAGAATGTGGCATCATCCTCACCACTAGAAAAGTTGGCAACCTATCCA CACAAAAAATAAAAAAAGAAATATGAACAGAAGTATAGAATTTAAGCATGATGTCTGAATCACA GGTCATATGGTAGTGCACAGAACATGCCTTGAATGCACTAAGAAGTTCATTTCCTTCCTCCCCT TCACCACCCTTTGTTTCAACTTTCTCAGCTCTCTCGAGAATTTCATCAATGTCCATGCTTTCAA GCTTCTTCTTGGTCTCTTCATCAGTCTTATCTTCTTTGAATAACTCTTCTGCTCCAAATCTCAA TATCGCTGAAAGTTCATTCTGGCAAAATGTATAGCTCACATCAGAAGAGCAAAACAGAAAATAC AAGTGAGGTGACAAGCCAGATTCTATTTAATGCATTTCTCTCAGAATTTTAATTATCAGTAAAT GCTCTTGTGTTGTAGAGAGAATTATAGCTTGGGTATCTTGAAAGAAGGCTGGTCTAGTCACATG AGCATATATATACCACACTAGACTTACAGCCTGTATCACTAACAATCGCTTAGTTGATAAGTTA CTGGTAGTTTTAACAATCTTTTGTAATACAATTATACAATAGATAGATTTCAAATATACAAATC TATCTTATATACAAAAGATTGTTAAAACTACCTAAGTAATATTGTTGTACCAAACCAATATGAC ATCCAAATCAACCCAAATACCTAAGTAAACTAAATAACTGGTGCAGAAACTTACCTTGTCAAAC ATGGAACCACCTTTTTTTGATTCTTTCTTCTCGAGCCTGCCCTCAGCATTTAGCTTCTGAATCA CTAGGTGATCAAGAAC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.244536968

Conservation Information
Conserved circRNAs	NA
PMCS	0.244536968

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015;Chu et al., 2017

circRNA

Detail information of Os07g0660200_circ_g.1

Address

Any questions?

Supported by