Detail information of AT2G05120_circ_g.1


General Information
CircRNA Name AT2G05120_circ_g.1
ID in PlantcircBase ath_circ_012837
Alias 2:1842711-1842935
Organism Arabidpsis thaliana
Position chr2: 1842711-1842935  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G05120
Parent gene annotation Nucleoporin, Nup133/Nup155-like
Parent gene strand -
Alternative splicing NA
Support reads 2/1
Tissues root;flower
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered AT2G05120.1:2
AT2G05120.2:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACCACCCATAGATAATTAACTAGTATACCTGCCACATAGGCTATCTTTGAAAGGTTCAGAAACC
GCTTGCGGTCTGCGAATGTTGGTTGTACATCTTCAGtaagttgagatcagcttcaatgcgcttc
actttcgattcggaatcagcatccttatctgcaatgcgaaaattatcatgattttcagaaagaa
agacaaag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TAAGTTGAGATCAGCTTCAATGCGCTTCACTTTCGATTCGGAATCAGCATCCTTATCTGCAATG
CGAAAATTATCATGATTTTCAGAAAGAAAGACAAAGAAACAATAACATGTGGAATAATTATACC
ACCCATAGATAATTAACTAGTATACCTGCCACATAGGCTATCTTTGAAAGGTTCAGAAACCGCT
TGCGGTCTGCGAATGTTGGTTGTACATCTTCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.183709111
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020