Plant Circular RNA Database

Detail information of AT1G73430_circ_g.5

			
						 General Information
					
						CircRNA Name
						AT1G73430_circ_g.5
					
						ID in PlantcircBase
						ath_circ_009983
					
						Alias
						Ath_circ_FC0979, Ath_circ_FC0980
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr1: 27603949-27609687  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						CIRCexplorer, PcircRNA_finder
					
						Parent gene
						
							AT1G73430						
					
						Parent gene annotation
						
							Sec34-like family protein
							
						Parent gene strand
						+
					
						Alternative splicing
						
							AT1G73430_circ_g.1 AT1G73430_circ_g.2 AT1G73430_circ_g.3 AT1G73430_circ_g.4 AT1G73430_circ_g.6 AT1G73430_circ_g.7 AT1G73430_circ_g.8 AT1G73430_circ_g.9 AT1G73430_circ_g.10 AT1G73430_circ_g.11 AT1G73430_circ_g.12 AT1G73430_circ_g.13 AT1G73430_circ_g.14 AT1G73430_circ_g.15 AT1G73430_circ_g.16 AT1G73430_circ_g.17 AT1G73430_circ_g.18 AT1G73430_circ_g.19 						
					
						Support reads
						8
					
						Tissues
						inflorescences, whole_plant
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT1G73430.1:22
AT1G73430.2:22

General Information
CircRNA Name	AT1G73430_circ_g.5
ID in PlantcircBase	ath_circ_009983
Alias	Ath_circ_FC0979, Ath_circ_FC0980
Organism	Arabidpsis thaliana
Position	chr1: 27603949-27609687 JBrowse»
Reference genome	TAIR10.38
Type	ue-circRNA
Identification method	CIRCexplorer, PcircRNA_finder
Parent gene	AT1G73430
Parent gene annotation	Sec34-like family protein
Parent gene strand	+
Alternative splicing	AT1G73430_circ_g.1 AT1G73430_circ_g.2 AT1G73430_circ_g.3 AT1G73430_circ_g.4 AT1G73430_circ_g.6 AT1G73430_circ_g.7 AT1G73430_circ_g.8 AT1G73430_circ_g.9 AT1G73430_circ_g.10 AT1G73430_circ_g.11 AT1G73430_circ_g.12 AT1G73430_circ_g.13 AT1G73430_circ_g.14 AT1G73430_circ_g.15 AT1G73430_circ_g.16 AT1G73430_circ_g.17 AT1G73430_circ_g.18 AT1G73430_circ_g.19
Support reads	8
Tissues	inflorescences, whole_plant
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT1G73430.1:22 AT1G73430.2:22

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TTCGCAGGAACTGGAAAAATGTCTTAAGACAACTTGTGAGGAGTTCATCATGTCAGTAACTAAG
CTAGTTGTGGATCCTATGCTTTCATTTGTGACGAAGggatctgaaatttcttcctctgcatgtg
ctctcgtggtttcttccttgataattccttgctcattccctgcatgtgactcccgatcatcgtc
ttcctctt

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 2145
Transcript exons: 27603949-27604182,27604292-27604375,27604463-27604570,27
604724-27604768,27604866-27604940,27605041-27605136,2760
5350-27605427,27605664-27605749,27605887-27605953,276061
30-27606192,27606379-27606480,27606649-27606753,27606843
-27606935,27607227-27607315,27607673-27607892,27608195-2
7608284,27608358-27608474,27608572-27608604,27608807-276
08893,27608968-27609030,27609206-27609322,27609595-27609
687
GGATCTGAAATTTCTTCCTCTGCATGTGCTCTCGTGGTTTCTTCCTTGATAATTCCTTGCTCAT
TCCCTGCATGTGACTCCCGATCATCGTCTTCCTCTTCCAAGTTACGAATCAAAATCATAGCCGA
GATTCAGATTTCATAGACAATGGCGACTAAGGCGGCTTCGTCTTCCAGCCTCCCCAAATCTGGA
GCCATTTCCAAAGGCTACAATTTCGCTTCGACTTGGGAACAGAGCGCTCCTTTGACAGAGCAGC
AACAAGCAGCTATTGTTTCTTTATCCCACGCAGTCGCTGAGCGGCCATTTCCTGCCAATCTTGT
ACATGAGCATGTTCACAGGCCTGAGAATGGCTTGTCTGTCTCCGTGGAGGACACACATTTGGGA
GATTCTGGAGCAATTGAAGCTGTTTTGGTTAATACAAATCAGTTCTACAAATGGTTTACTGATC
TTGAATCAGCGATGAAGTCTGAGACAGAGGAAAAGTATCGGCACTATGTTAGTACTTTAACTGA
GCGCATCCAGACGTGTGATAATATACTTCACCAGGTTGATGAAACACTTGACCTATTTAACGAA
CTGCAGCTACAACATCAAGGAGTAACAACAAAGACTAAAACTCTTCATGACGCATGTGACCGAC
TGTTAATGGAGAAGCAGAAATTGATGGAATTTGCAGAAGCTCTAAGGAGTAAGCTCAACTATTT
TGATGAACTGGAGAATGTATCCTCTAATTTTTATTCACCAAATATGAATGTATCAAACTCAAAC
TTTCTCCCACTACTGAAACGGCTGGATGAGTGCATATCGTACATCGAAGATAATCCTCAATATG
CGGAGTCGAGTGTTTATTTGCTCAAATTTCGTCAACTCCAGTCACGGGCCTTGGGCATGATTCG
AACTTACATCCTTGCAGTGCTTAAAACGGCTGCTTCTCAGGTTCAGGCAGCATTTCGTGGGACA
GGTGGAAACAAAACATCTGTCTCGGAGGGTGTCGAGGCATCTGTTATATATGTTCGCTTCAAGG
CTGCTGCAAATGAGCTTAAACCTGTATTGGAGGAGATTGAGAGTAGGTCAGCAAGAAAGGAATA
TGTCCAAATCCTTGCAGAATGCCACAGACTATACTGTGAACAACGGCTCTCGCTTGTCAAAGGC
ATAGTGCACCAACGAGTATCTGATTTCGCCAAGAAAGAGGCACTGCCATCTTTAACTAGATCGG
GTTGTGCATATCTGATGCAGGTTTGTCATATGGAGCATCAACTGTTTACTCATTTCTTTCCAGC
ATCGTCAGAAGAAGTTTCGAGTCTGGCACCTTTAGTGGATCCTTTGTCTACGTACTTGTATGAC
ATTTTACGCCCAAAATTAATTCACGAAGCAAATATTGATCTTCTATGTGAGCTCGTTCATATCC
TTAAAGTTGAAGTCCTGGGAGACCAGTCAGCTAGACAGAGTGAACCCCTGGCCGGACTGAGGCC
TACATTACAAAGAATTTTGGCCGATGTAAATGAGAGATTGACTTTCCGTGCCAGAACATATATT
AGAGATGAGATTGCAAATTATACCCCCTCTGATGAAGATCTGGATTATCCTGCAAAGCTGGAAG
GATCTCCTAATACAACATCTGAAACTGATCTCAGGGATGATGAAAACGCTGATGTGTTTAAGAC
TTGGTATCCACCTCTTGAAAAGACTCTCTCTTGTCTATCTAAATTATATCGTTGCTTGGAGCAG
GCCGTCTTCACTGGATTAGCACAGGAAGCTGTAGAAGTTTGCTCACTGTCAATTCAAAAAGCCA
GCAAGCTTATCATTAAGCGATCAACTACAATGGATGGCCAGCTTTTCCTTATCAAGCATCTCCT
TATCTTGAGAGAACAGATTGCCCCTTTTGACATAGAATTTTCAGTAACCCATAAGGAGCTTGAT
TTCTCTCATTTACTGGAACACTTGAGGAGGATACTTAGAGGTCAAGCGTCACTTTTTGACTGGT
CTAGGTCAACCTCTCTAGCAAGGACCCTGTCACCTCGAGTTTTGGAGAGTCAAATAGATGCCAA
AAAGGAACTGGAAAAATGTCTTAAGACAACTTGTGAGGAGTTCATCATGTCAGTAACTAAGCTA
GTTGTGGATCCTATGCTTTCATTTGTGACGAAG
						
					

						Genomic sequence
						
							TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.						
					

			
		

Sequences
Splice junction sequence	TTCGCAGGAACTGGAAAAATGTCTTAAGACAACTTGTGAGGAGTTCATCATGTCAGTAACTAAG CTAGTTGTGGATCCTATGCTTTCATTTGTGACGAAGggatctgaaatttcttcctctgcatgtg ctctcgtggtttcttccttgataattccttgctcattccctgcatgtgactcccgatcatcgtc ttcctctt
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 2145 Transcript exons: 27603949-27604182,27604292-27604375,27604463-27604570,27 604724-27604768,27604866-27604940,27605041-27605136,2760 5350-27605427,27605664-27605749,27605887-27605953,276061 30-27606192,27606379-27606480,27606649-27606753,27606843 -27606935,27607227-27607315,27607673-27607892,27608195-2 7608284,27608358-27608474,27608572-27608604,27608807-276 08893,27608968-27609030,27609206-27609322,27609595-27609 687 GGATCTGAAATTTCTTCCTCTGCATGTGCTCTCGTGGTTTCTTCCTTGATAATTCCTTGCTCAT TCCCTGCATGTGACTCCCGATCATCGTCTTCCTCTTCCAAGTTACGAATCAAAATCATAGCCGA GATTCAGATTTCATAGACAATGGCGACTAAGGCGGCTTCGTCTTCCAGCCTCCCCAAATCTGGA GCCATTTCCAAAGGCTACAATTTCGCTTCGACTTGGGAACAGAGCGCTCCTTTGACAGAGCAGC AACAAGCAGCTATTGTTTCTTTATCCCACGCAGTCGCTGAGCGGCCATTTCCTGCCAATCTTGT ACATGAGCATGTTCACAGGCCTGAGAATGGCTTGTCTGTCTCCGTGGAGGACACACATTTGGGA GATTCTGGAGCAATTGAAGCTGTTTTGGTTAATACAAATCAGTTCTACAAATGGTTTACTGATC TTGAATCAGCGATGAAGTCTGAGACAGAGGAAAAGTATCGGCACTATGTTAGTACTTTAACTGA GCGCATCCAGACGTGTGATAATATACTTCACCAGGTTGATGAAACACTTGACCTATTTAACGAA CTGCAGCTACAACATCAAGGAGTAACAACAAAGACTAAAACTCTTCATGACGCATGTGACCGAC TGTTAATGGAGAAGCAGAAATTGATGGAATTTGCAGAAGCTCTAAGGAGTAAGCTCAACTATTT TGATGAACTGGAGAATGTATCCTCTAATTTTTATTCACCAAATATGAATGTATCAAACTCAAAC TTTCTCCCACTACTGAAACGGCTGGATGAGTGCATATCGTACATCGAAGATAATCCTCAATATG CGGAGTCGAGTGTTTATTTGCTCAAATTTCGTCAACTCCAGTCACGGGCCTTGGGCATGATTCG AACTTACATCCTTGCAGTGCTTAAAACGGCTGCTTCTCAGGTTCAGGCAGCATTTCGTGGGACA GGTGGAAACAAAACATCTGTCTCGGAGGGTGTCGAGGCATCTGTTATATATGTTCGCTTCAAGG CTGCTGCAAATGAGCTTAAACCTGTATTGGAGGAGATTGAGAGTAGGTCAGCAAGAAAGGAATA TGTCCAAATCCTTGCAGAATGCCACAGACTATACTGTGAACAACGGCTCTCGCTTGTCAAAGGC ATAGTGCACCAACGAGTATCTGATTTCGCCAAGAAAGAGGCACTGCCATCTTTAACTAGATCGG GTTGTGCATATCTGATGCAGGTTTGTCATATGGAGCATCAACTGTTTACTCATTTCTTTCCAGC ATCGTCAGAAGAAGTTTCGAGTCTGGCACCTTTAGTGGATCCTTTGTCTACGTACTTGTATGAC ATTTTACGCCCAAAATTAATTCACGAAGCAAATATTGATCTTCTATGTGAGCTCGTTCATATCC TTAAAGTTGAAGTCCTGGGAGACCAGTCAGCTAGACAGAGTGAACCCCTGGCCGGACTGAGGCC TACATTACAAAGAATTTTGGCCGATGTAAATGAGAGATTGACTTTCCGTGCCAGAACATATATT AGAGATGAGATTGCAAATTATACCCCCTCTGATGAAGATCTGGATTATCCTGCAAAGCTGGAAG GATCTCCTAATACAACATCTGAAACTGATCTCAGGGATGATGAAAACGCTGATGTGTTTAAGAC TTGGTATCCACCTCTTGAAAAGACTCTCTCTTGTCTATCTAAATTATATCGTTGCTTGGAGCAG GCCGTCTTCACTGGATTAGCACAGGAAGCTGTAGAAGTTTGCTCACTGTCAATTCAAAAAGCCA GCAAGCTTATCATTAAGCGATCAACTACAATGGATGGCCAGCTTTTCCTTATCAAGCATCTCCT TATCTTGAGAGAACAGATTGCCCCTTTTGACATAGAATTTTCAGTAACCCATAAGGAGCTTGAT TTCTCTCATTTACTGGAACACTTGAGGAGGATACTTAGAGGTCAAGCGTCACTTTTTGACTGGT CTAGGTCAACCTCTCTAGCAAGGACCCTGTCACCTCGAGTTTTGGAGAGTCAAATAGATGCCAA AAAGGAACTGGAAAAATGTCTTAAGACAACTTGTGAGGAGTTCATCATGTCAGTAACTAAGCTA GTTGTGGATCCTATGCTTTCATTTGTGACGAAG
Genomic sequence	TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.167335926

Conservation Information
Conserved circRNAs	NA
PMCS	0.167335926

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017;Chen et al., 2017a

circRNA

Detail information of AT1G73430_circ_g.5

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