Detail information of BGIOSGA017438_circ_g.2


General Information
CircRNA Name BGIOSGA017438_circ_g.2
ID in PlantcircBase osi_circ_006443
Alias 5:31001502|31001703
Organism Oryza sativa ssp. indica
Position chr5: 31001502-31001703  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   i-circRNA
Identification method find_circ
Parent gene BGIOSGA017438
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA020487_circ_igg.1 BGIOSGA020487_circ_igg.2 BGIOSGA017438_circ_g.1
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   CT-AC
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTACAATATCAGGCAATAGAGATGGATGCAGTGCCCTTTCTTCATACGAAGTATATACCAATCA
ATGATAGGGCTAATGCAAGCAAGATGAAGTATTTACaaagagcacatgatggcatgaagaaatt
caggatttaattgacaggttctctacatctgtatatatggatggaaaacaaaatggatgttggg
taatatca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AAAGAGCACATGATGGCATGAAGAAATTCAGGATTTAATTGACAGGTTCTCTACATCTGTATAT
ATGGATGGAAAACAAAATGGATGTTGGGTAATATCAGATTACAATATCAGGCAATAGAGATGGA
TGCAGTGCCCTTTCTTCATACGAAGTATATACCAATCAATGATAGGGCTAATGCAAGCAAGATG
AAGTATTTAC
Conservation Information
Conserved circRNAs osa_circ_029243*
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021