Detail information of BGIOSGA015287_circ_g.2


General Information
CircRNA Name BGIOSGA015287_circ_g.2
ID in PlantcircBase osi_circ_005394
Alias 4:14271091|14272066
Organism Oryza sativa ssp. indica
Position chr4: 14271091-14272066  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA015287
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA015287_circ_g.1
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA015287-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGGACTCCGATTGACTCACATTGTGGCTTGACAGTGAGGAGGACCTTCTCGCCCTTCTTCATCG
TCTTGACAGCCTTTGAAAGCGCCGGGCAGAAATAGCcttttcgtatctcttggaggccttagca
tacttgcccatcttgaaccacacattcccttcatctttcttcttggcagctgcttcaatcttct
cagcattg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTTTCGTATCTCTTGGAGGCCTTAGCATACTTGCCCATCTTGAACCACACATTCCCTTCATCT
TTCTTCTTGGCAGCTGCTTCAATCTTCTCAGCATTGTCCTTCAAATCCCATGATTCTTTCTCCT
GAGCGAAATCCAGAATTTTTAATCACTTTCAGCTCAACCAAAATCAAGAGACAGGTAAACAAAC
AACGAGGAGTTGATGGATTACCTTCTCGAATGAGACAAGCTCAACTTCATACCAGACTGTGGAG
TTTGCAGGAACAACAGCAAGATCCTGCTTAGTCTCAGTGGATCCGAAAGCATGTTGAGGTGGTA
ATCTCACCAATGCAACCTCTCCTTTCTTCATGGTGACCACAGTTCTGTCCAGCCCTTCGATGAC
TTGCTCCTCATCTGTCCTGAACTCAAATGGCTCATCACCATCATGCCCTTTCTTGGAAAACACA
GTGCCGTCCTCCAACTTGCCGATAAATCTCACTGCAAAAGCACAACAAACCATGTTCTTGAACA
CATTGCAAGTGTGCAGGTACAATAGAACCATAACAAATGCAAGAATTAGCAGCAGCAGCACACA
CCTCTAACTACTGCTCCATCGTTAGGGCGCTCATAGCCCTCCCCTTCCTTGAGGACTTTCTTCA
GGATGCGCTTATCGTCGCCGATCAGAGTGACCGTCTTCCAGGAGAGCAACTCAAGATCGACGTA
CAGGGTAGCATTTGGCGGCACAGCAGCTTCAGCTCCAGAAGCTGGTTTGCCTTGCTCACCAAAG
CCATCTACAGATCAGAAAAGTGCATGTCAGCACTCAACAATGCCATTTCCAAGATCATCAGAAC
ATTACCACCAAAGACATAGATTAGTTGCAAAATCTCTTGAAAGGAGGACTCCGATTGACTCACA
TTGTGGCTTGACAGTGAGGAGGACCTTCTCGCCCTTCTTCATCGTCTTGACAGCCTTTGAAAGC
GCCGGGCAGAAATAGC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 14271190-14271852(-)
14272030-14272027(-)
Potential amino acid sequence MLRRLKQLPRRKMKGMCGSRWASMLRPPRDTKRLFLPGAFKGCQDDEEGREGPPHCQATIWLW*
(-)
MKKGEKVLLTVKPQYGFGEQGKPASGAEAAVPPNATLYVDLELLSWKTVTLIGDDKRILKKVLK
EGEGYERPNDGAVVRVRFIGKLEDGTVFSKKGHDGDEPFEFRTDEEQVIEGLDRTVVTMKKGEV
ALVRLPPQHAFGSTETKQDLAVVPANSTVWYEVELVSFEKEKESWDLKDNAEKIEAAAKKKDEG
NVWFKMGKYAKASKRYEKAISARRFQRLSRR*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021