Detail information of BGIOSGA016029_circ_g.2


General Information
CircRNA Name BGIOSGA016029_circ_g.2
ID in PlantcircBase osi_circ_015153
Alias Chr04:10952490_10959167(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 8845849-8850527  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA016029
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA016029_circ_g.3 BGIOSGA016029_circ_g.4
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-NN
Number of exons covered BGIOSGA016029-TA:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTCGTGAACATGTACTGCTTGCAAAAACTTTAGGTGTTGCTAAGTTGATAGTTGTCATCAATAA
GATGGATGAACCAACTGTAAAATGGTCTAAAGAAAGaagagaagaatttcaaaagatttacagt
taaaaaggtgtttgtggttgtaccatactcatactaactataccagccactgttctacttgttt
ttttgtgg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AAGAGAAGAATTTCAAAAGATTTACAGTTAAAAAGGTGTTTGTGGTTGTACCATACTCATACTA
ACTATACCAGCCACTGTTCTACTTGTTTTTTTGTGGGATATTTGATGACATTGTGTATGAATTC
TTTTGTTTGCAGTAGTTTTTTCTTCTAAAAACTACTTTGTTATTTTAATTAAAATCAGTTTACT
ATTGGACATCCATTTTAGACAACTTTCGTGCGCCATATGTTGTTTGTCTATTAGAAAACAATTG
ATTGAGCTTGTTAAATCTGCTTACTTAGCTTGTGGCTTCAAAATATGTTGCATGTTTTTCTTTT
TTACATATTTTTGTTGCTTGTTGAATAGTCATATAGTACAGTTACAGAAGCTTATTGCTAACAA
TGTGTTGATTCTCTAGATCTGTTGCTTCTCCTATTTTATTTTTGTTGTTTCATATTCCCAGATG
CTGGAAAATCAACTGCCGGAGGGCAAATACTTTTCTTGAGTGGTCAAGTCGATGACAGGACCAT
CCAGAAGTATGAAAAAGAAGCAAAAGATAAAAGCCGAGAAAGCTGGTGGGTACTTCTATCGTTT
CCTTCTTCCAGACGGATAAACCAGATGCCTTTTTTCGAACTCACGGCTTATATTCTTTTGCTTG
ATTTTCCATATGAATAAAGCAAAGTTTGAGTTGACCCTGCATTAACTAGTCTAGCGTTTGCTAT
AGTTGCAATTAATTCTGTCATTGTTCTTGCTTTGATTAAAGGGAAAGAAAAAGTTTACATTGGA
ACTGCTATTAGAAAGTAGCTACAAACTTACAAGTGTTTGAGCAATAACTGTCTAGTACAGAAGA
TTCATAGTGTCAGACTGGCGGTAGAGGAAATATCTACGAACTACTCCCTCCGTCCCAAAATCTA
GCAACCTAGGATGTGTCCTAGGATGGACATACCATGTGTCCATAGGTTGCTACATTTTGGGATG
GAGGTAGTATATCTTCTTTTTGCTATATTATTGTTGAAGGATATCTCAAATACAAGGGCTTTAA
TTTGTTTGTTGGTTAGGACACACTATATGATATGATTGAGTGACTAAAGGATGTTACCGAGTTA
AGAGTTTAGTATTAAATTCGCACCTGTTTTATAAGTTGAACTCCTAAAAACTATCAACAAGCTT
AGATACCTGAAACACTGTCTTTTCCTGTACTTTTTGTAAAGTTTTTTTTTTTCGATACTGCTTG
ACATTATAACCTGATCTGAAATACTTGCAGGTACATGGCTTACATTATGGACACAAATGAGGAA
GAGCGGCTAAAGGTATCGCTTCCATATAGGTGGCATGCTTCATCTATATTGTGTTTAGTTGTAC
AAAATTAGTGGCATGCTCTTGAAATACCTCATCAAGGGATAATTCGTTTATATGACTTTGTTAG
TCTAGAATAACCTGATGCATACTTCAATCTGTACACTCTAGTCAACAAAATAATATTTCATTCT
CCTAGGTGACAGATCTTTTGAAGGTGCTTTTGTATTATGAATTTATGATGATGCTGATTTTTAC
TGTACTTTGATCTTGTTTCTGTGTTTTTTTAGGGGAAAACTGTTGAAGTTGGTAGAGCCCACTT
TGAGACAGAAACTACAAGATTCACTATTTTGGATGCACCGGTATTTCTCTTTCACTGTATTACT
GTTATAGTGGTACTTTTCTTTCATATTGTCTTTGAATACTTAAAACAAAGAGTTTGTGTGTTCT
ATTTACCCTTCATACTCGCCAAAAATCTTATGTAGATTGTACTATGTAGACGTCGGTTATTTTT
AAAGGATTTGGATTTGCATCCTCTCCTTGTGTATATGCAGGTTACTGATCTAATGTGACTTGTT
TATCCAATGTTTTAGATACGATCATAATATGTTTTGCATTTTTTTAATTCAAAACTTATGTTAT
ATTTATTTGATATCCATCAAGGGCATGGGTTTCCTTGTAGTTGTTAGGTTGTTTATTCTTTTTC
ATATTGTGTTATGCTTTTCCTGATATAGTGTATAAGAGAATTGTTGTGTACTTGTCTGGAACTC
TAGTTTGGACTGTACAAACACTTAGCTATTTATGTATTCCAGTAAAATTTTTCGTCCGTCGTAA
AAAAAAAAGTGTCCGTCGCTCTCACGTCATCCAAGTCTGCACCAAATCGGGTCTGTCGTCCGTG
AAAATTTTCATCCGTAAATCCGATTGAAATCCAATCGGACAATCCAAAGAAAGAGAAAAGGAAC
GGGAAAAATAATAATAAGTGCAAAAATCTTATCTTAATCCCGCGGGAAGCTGTTCACGCCGTCG
GTTGCGGAGGGGGGAGGCCGCCGCCGCCGCTCGCGGGCGCCAATGCCATCGGATCCTCCTGGAG
GAAGCCGACGCCGTCGCTCGCGGTGGGGGAAGGCCGCCGCCTCGACTCGCGCGCCGCCGCTGCC
GCCACTGCCACCGCCTCCGGTCCGAGCCGACGTCGTCGCTCGCGGTGGGGGAAGGCCGCCGCCT
CTGCTCGCGCGCTGCCGCCGCCGCCTCTGCTCGCGCGCTGCCGCCGCCGCTGCTGCTCGTCGCC
GGGAGAGAGGATCGGGATAGAGAACGGGAGAATCGAGGGTTAGGGTTAGGGCTTCCCCGGCCGT
CCGCGTCTTCAACGGTGCGGAGGCGATCCAAGCCGTCCATCAGATCGGACGGGTCAGATCGCCT
GCGCGTCGGGCCGCCTCCATTGCCGGCCGCCAACACTTAATGCCGAGGGCAGGCCGGCTGGTCC
AACACAACACAATAAGAGGATGAGTTGGGGGAGGCAAATTAGACTTATTTTGCGGGCTGACATA
GTAATTGACTGAAAATGGCCCATAGAGAAATTGGTGATGGAATAAGCCTTGTGGTCTTTGGTCC
TTGTGGTCCCTCTCTTGTTTTTAGGTTGTTTTTCCCTTTTAGGACAACATCCTTTCAGTTTTGC
TTTTAGCATCTCTAGGACAGCATCTAGGACCATCACCTTTATGCTTTATTCAGTTTGGATGCTC
TCTAGGACAGCATTGCGTTCAAATTTTTAGACTAGTGTGGGCAGCAATTAGCTTGCAGCCATCC
AGCCAGCTATGGCTATATATATGTATCCAACCTCCCTCGGGAAGGTATGGCTTTTGAGTTTGTG
AATGAAGAAAACCAGAAAATTGCCCCACTCTGAGTGCCATCCTATTCTCAATGAGAGTAACCAT
TGAAGTTCTAACAATTGGGATTTTTATTTACATTTTTATTTAAATAAATGTTGAAATGATGTTT
GTATTATCAAAATTAGCAATTAAGCTCCGAAAATTCCAACAAAATTTCAAATAGTGTTATTAAT
CATGGTTAATTTAATAAAAAAATAAATCTAACTATATCATATTATTTCACTGAGCGGGTGGGGA
AATGCTCATGGTGGTAGAGAAGGGGAATAAATTTAGGGTTAGGTATAGATTCAATTCATTGTTT
ATGTCAAGAACTATCTCATATAACTCCCATGGAACTAGAAAATAACTCTAATCATTATCATTAC
ATTAGTTTTTTTCCCGTTGCAACGCACGGGCATTTTTTCTAGTTATGACTAAATTGCTTAAGGA
AACTTCCTAAGTGCTCGTGGTTCTCCTTGAATAATTTTGCTAGATGCTATTATACCTGATAAAA
ATAATTATTAAATAGGATTGTCTTGTGCTCAAACTTGCAATACTCTGGGGATTGTAGTTGTGGA
CCACGAGATGTCCCCTGTACCTGATACCCAGATGCCATGTTGGTAACTTTGCTGTTTGGCGTAC
AGGTGAAGATGAAGGTTATATCCTGCTTTAGTTTTGCTTAATCACTAAAGAAAGAAGTATGAGG
GCATGAGGCATATATAGCCGGCCAAATAATGAAATAAACCAAATCTGGAAAGACAATCTCAGGT
TCTCAGCTAAGAAATAAACAATAAACAGATTTAGCTTAAATAGAACTGAAGTCTCTTGTCTCTT
TACCTATTCTGATGCAGCCCCTGCATAATGAACTGGACCTCCCTTGGTCTCACACCAGTAATAA
GTAATTTGCCACATAATATCTTGTCATTTCATGGGCTTTAATTGATGCAATAGACTCATGTGAT
GATACCATGTTCTAGACAAAATATCCAAGTATGCCCCCGTTTAGACCAAAATCTAACCATCCAA
ATTCCTAACTAAGATCAGTAAAAAGCTTTTAGAAGTTGTCAAATGACACATCCAAATTCCATCA
ATTCCAATAATGTGAAATTATTGTTTTTGATCAAGTGTCTTGCTGTCTTGTCATCTCTTGTGAT
GATGCTTCTTTCTTTTTGATGAACTGTACTTTTGTATCTTTTATGCTATTTGTTTACTTTCGTG
GTTTAAATTTGCAGGGTCATAAAAGTTATGTTCCAAATATGATAAGTGGTGCATCTCAAGCAGA
CATCGGTGTTCTGGTAGCTATATGACCTGGGGCTTCTGTTCTTTCTGCTAAACTTCTGCTTTCC
ATTTATTCCTCTGGTAATGATTACATTTCCTTTTCTTTTTATAGGTTATATCTGCCCGAAAAGG
TGAATTTGAAACTGGTTACGAAAAAGGAGGACAGACTCGTGAACATGTACTGCTTGCAAAAACT
TTAGGTGTTGCTAAGTTGATAGTTGTCATCAATAAGATGGATGAACCAACTGTAAAATGGTCTA
AAGAAAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021