Detail information of Os05g0552200_circ_g.2


General Information
CircRNA Name Os05g0552200_circ_g.2
ID in PlantcircBase osa_circ_042174
Alias NA
Organism Oryza sativa
Position chr5: 27458434-27458620  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRI-long
Parent gene Os05g0552200
Parent gene annotation Glycosyl transferase, family 31 protein. (Os05t0552200-01)
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Os05t0552200-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACGGCGGCGGTGGCGGCGTCCGTGCCAGGACGGCCGCAGCCGCCGGAGAAGAAAGACTGGATGC
GGAACTCGTTGGGGTGGACGACGAAGACGcaccctcacgtcgttgtccggcgaccgcgccgccg
tggtcgcggcagcagcatcacttgcgccgccgctgacattcttgaccggcgaggcagca
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 187
Transcript exons: 27458434-27458620
CACCCTCACGTCGTTGTCCGGCGACCGCGCCGCCGTGGTCGCGGCAGCAGCATCACTTGCGCCG
CCGCTGACATTCTTGACCGGCGAGGCAGCAACGGCGGCGGTGGCGGCGTCCGTGCCAGGACGGC
CGCAGCCGCCGGAGAAGAAAGACTGGATGCGGAACTCGTTGGGGTGGACGACGAAGACG

Genomic sequence CACCCTCACGTCGTTGTCCGGCGACCGCGCCGCCGTGGTCGCGGCAGCAGCATCACTTGCGCCG
CCGCTGACATTCTTGACCGGCGAGGCAGCAACGGCGGCGGTGGCGGCGTCCGTGCCAGGACGGC
CGCAGCCGCCGGAGAAGAAAGACTGGATGCGGAACTCGTTGGGGTGGACGACGAAGACG
Conservation Information
Conserved circRNAs NA
PMCS 0.160872816
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study