Detail information of Os08g0386700_circ_g.4


General Information
CircRNA Name Os08g0386700_circ_g.4
ID in PlantcircBase osa_circ_036942
Alias NA
Organism Oryza sativa
Position chr8: 18244407-18247352  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os08g0386700
Parent gene annotation Similar to Avr9 elicitor response protein-like. (Os08t0386700-01
)
Parent gene strand +
Alternative splicing Os08g0386700_circ_g.1 Os08g0386700_circ_g.2 Os08g0386700_circ_g.3 Os08g0386700_circ_g.5
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os08t0386700-01:10
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACATATGCACATGATGATGTTAGTGTAGGATCATGGTTAATTGGTCTTGCTGTGAAGCATGTAA
ATGAAGCAAAACTATGTTGTTCATCCTGGCCCTCAGtctgtggcaggatgcgcagagtagggtt
tacctgattaaagagctcgacaggcgaaccggccaggttggtgccttcagatctaccctcttct
actatatc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 893
Transcript exons: 18244407-18244470,18244575-18244624,18244829-18245022,18
245564-18245627,18245700-18245772,18246123-18246246,1824
6732-18246819,18246905-18246955,18247059-18247130,182472
40-18247352
TCTGTGGCAGGATGCGCAGAGTAGGGTTTACCTGATTAAAGAGCTCGACAGGCGAACCGGCCAG
GGCCATTCGACGATATCGGTGGATGATACCTTGAAGGTTGTCGCATGCAGGCAGCAAGGAAAGA
GGCTGGCCTCACTTGAGATGGAGCTGGCTGCAGCAAAGCATGAAGGTTTCGTGGGGAAATATAC
CTATGAGACAAATGGAACTAACTCTAGAAAGAGGCCACTGATTGTTATTGGAATAATGACAAGC
TTTGGGAGGAAAAACTACCGTGATGCTGTCAGGAAGTCATGGCTTCCGACAGGTTCAATGCTGA
AGAAACTAGAAGAAGAAAAAGGCATTGTAGTGCGCTTCATAGTTGGAAGAAGTGTGAACCGAGG
AGATGCTTCAGACAGGGAGATTGATGAAGAAAATAGAAGTACAAAAGATTTCATGATCTTGGAT
GATCATACAGAGTCTGAAGAGGAGAGTCCTAAAAAGACAAAAAGTTTCTTTGCTAATGCTGCAG
AGTCATTTGATGCTGAATTCTATGCTAAGGTCAATGATGATATATACATAAATGTTGACACTTT
GAGTGCAATGCTCAAAGAACACTGGGACAAGCCTCGTGTCTACATTGGCTGTATGAAATCCGGC
GAGGTCTTCTCTGAATCAACTCATAAGTGGTATGAACCAGAATGGTGGAAATTTGGTGATGGGA
AAACGTACTTCCGCCATGCTTCTGGTGAAATGTTTGTCATCTCAAAGGCTGTAGCTCAATTCAT
CTCTATAAACAGGTCTGTTCTCCGGACATATGCACATGATGATGTTAGTGTAGGATCATGGTTA
ATTGGTCTTGCTGTGAAGCATGTAAATGAAGCAAAACTATGTTGTTCATCCTGGCCCTCAG

Genomic sequence TCTGTGGCAGGATGCGCAGAGTAGGGTTTACCTGATTAAAGAGCTCGACAGGCGAACCGGCCAG
GTTGGTGCCTTCAGATCTACCCTCTTCTACTATATCAATTACAACTAGCTAGCTTCAATTGAGA
GTAAAGAATAACAGGAACTTCTTTGTTGTGCAAAATTCAGGGCCATTCGACGATATCGGTGGAT
GATACCTTGAAGGTTGTCGCATGCAGGTAATTCTGATCTCTACTGTATGACTACAATATAGTAA
AACTGAGATGTTGTTGCAAAATTTGTTCTTTCTTTTCCCCAATTATTTTTGGCTCTATGTTGAT
TCGGGTGCTCTAAATTTGCGCGGCTTGTTTAGTTTGAGACTTCAGAGTTGTAGTGAATGCTCTG
TGCTAATTGCTGAACATCTGAACATCATTATGTTTTAGGCAGCAAGGAAAGAGGCTGGCCTCAC
TTGAGATGGAGCTGGCTGCAGCAAAGCATGAAGGTTTCGTGGGGAAATATACCTATGAGACAAA
TGGAACTAACTCTAGAAAGAGGCCACTGATTGTTATTGGAATAATGACAAGCTTTGGGAGGAAA
AACTACCGTGATGCTGTCAGGAAGTCATGGCTTCCGACAGGTACCATTTCGTACTTGCGTTCCT
CACTACCTGTGGCACTTTTATATCCTATAATTATAAATAAATTAATACGGTCACCTTTACCCTT
GATATTTGGTGGTCATAATTGACTTTCGAAGTCCTTAAAAGTTACTACTTTTTTTTATCATGGG
GCATGGGTTTTTTCCTCAAACGTACAAGAGAATGGCGCGCGTCATTAAGAAGAGAAGAGGTATA
CAAGGGGAGGAAAATAATCCCATTATAAGGGGCAGAAAGTACAATGCATGGGGCATGGGTTTTT
GTAGCTGTCTATTTATAATATTAATCACTAGAATGTTCGGCACTCTAGTTCATAATCTGGACTC
ATAGGTGGCTGAATGAACATGGAGAATAAAATGTATTTCTGTTGCTGCATAATAAAGTGGCACC
TTTTTTTTTTGTTGACGGTTATCAGTTGATGTAAATAAAAATGAGTTGGCTTCATTTCATTGTT
TTTCCGTCTTACTGTTGCATTAAAATGATGTCTGTTTTTTGGGTGATTTTAATTTTCTTCTCTG
TACAGGTTCAATGCTGAAGAAACTAGAAGAAGAAAAAGGCATTGTAGTGCGCTTCATAGTTGGA
AGAAGGTACCACAGGACTCCTTGCTAATAGAATGACTATATGAGGTCTAGATATCTGATAGTTC
CTTATCCATGTAGTGTGAACCGAGGAGATGCTTCAGACAGGGAGATTGATGAAGAAAATAGAAG
TACAAAAGATTTCATGATCTTGGTAAGCCTGATTGATCAATCAAACATGTGGTAGTACATATTT
ACAACATTGAATGTGTATATAAAATATTTTTCATCATAATTGTTCACCTTATTCATGTTGATTA
CATGTTGCTTGAAAACCAGATAAACGATGTGTGTGCATACTTGATTATATACGCCTTCTAGTAC
AACAACATCTGCCTTTAATCCCAAGCAAGTTGGGTAGGCTTATTGTGTATGCTTTTTTAGTATA
TGTTAAAAAAATCGTGCGCTGTGACTTGTAACAATGAGACTCCATGTTCATATTTTCAGATTAC
TCGTTTGGCCTGTTGATTTACTTCAGTTTTTTACTATTAAATGACATTGCAGGATGATCATACA
GAGTCTGAAGAGGAGAGTCCTAAAAAGACAAAAAGTTTCTTTGCTAATGCTGCAGAGTCATTTG
ATGCTGAATTCTATGCTAAGGTCAATGATGATATATACATAAATGTTGGTACGTAGCATCTCTT
CATATCATAGCTGTACTTATCCAATTTGGTATAGTTTTGTTTGATCAATGGTGCTTCTTTCTGT
TCAAAATATTTGACACAGTATGGATGTGCATGAGATATTGTACTAGTGGCAGAAGTTAAGAAAT
GGTTGACCAGTATGCATCCTTCAATACAAAAGTGACAACTAATTTTGGTTAAAGGGAGTTTTAG
CCATCCGCATATGGTGTTTCTATTAGCCCTTTTGTTATTGCTGACAGTGTTCCAACGTATTTTG
TTGTTATGTGATCATGATGATAATGAATTTGGGGGGTTGGAGCACGGTTTCAATTAGCTGTGGT
GCATGCCTCAATCTTGTGATCCTCACTGACCTGAATAAAAGGTCAATGTACACGTTCTAGGATG
CTGGATGGCAATGGCTGTATAGGTGCTATAATTTTGAAATGTTGCACAAACTATTAATAACATT
GAACAATTTGGGTTTGTGCAGACACTTTGAGTGCAATGCTCAAAGAACACTGGGACAAGCCTCG
TGTCTACATTGGCTGTATGAAATCCGGCGAGGTCTTCTCTGAATCGTGAGTGCTTTCAGCAATT
CTTTCTGGGGATATTGGTGCTGTATTTTTCCTTTGCACATTTTTCTAACAGCTTCCCCAAAAAC
AGAACTCATAAGTGGTATGAACCAGAATGGTGGAAATTTGGTGATGGGAAAACGTAAGTAATTT
ACATTAGGAAAACATTTATTGCGCATTTGCTAGTTGGGACATTTAAAAAAATTACTATTTTGGC
TTATCTATTTCAATTTATCAACTAATAGGTACTTCCGCCATGCTTCTGGTGAAATGTTTGTCAT
CTCAAAGGCTGTAGCTCAATTCATCTCTATAAACAGGTAAGCAATGTATGTAGTTTGTACTTTC
AACAAGGGTCTAATAGGTGGAAACAAAGAGAAGTTTCAGTAAGTACTTTTGGTGATGTATCTTT
GACACTTCTGTATGTAGGTCTGTTCTCCGGACATATGCACATGATGATGTTAGTGTAGGATCAT
GGTTAATTGGTCTTGCTGTGAAGCATGTAAATGAAGCAAAACTATGTTGTTCATCCTGGCCCTC
AG
Conservation Information
Conserved circRNAs NA
PMCS 0.221440965
Functional Information
Coding potential Y
Potential coding position 18247331-18244438(+)
18244861-18244438(+)
18244582-18247112(-)
Potential amino acid sequence MLFILALSLWQDAQSRVYLIKELDRRTGQGHSTISVDDTLKVVACRQQGKRLASLEMELAAAKH
EGFVGKYTYETNGTNSRKRPLIVIGIMTSFGRKNYRDAVRKSWLPTGSMLKKLEEEKGIVVRFI
VGRSVNRGDASDREIDEENRSTKDFMILDDHTESEEESPKKTKSFFANAAESFDAEFYAKVNDD
IYINVDTLSAMLKEHWDKPRVYIGCMKSGEVFSESTHKWYEPEWWKFGDGKTYFRHASGEMFVI
SKAVAQFISINRSVLRTYAHDDVSVGSWLIGLAVKHVNEAKLCCSSWPSVCGRMRRVGFT*(+)
MELAAAKHEGFVGKYTYETNGTNSRKRPLIVIGIMTSFGRKNYRDAVRKSWLPTGSMLKKLEEE
KGIVVRFIVGRSVNRGDASDREIDEENRSTKDFMILDDHTESEEESPKKTKSFFANAAESFDAE
FYAKVNDDIYINVDTLSAMLKEHWDKPRVYIGCMKSGEVFSESTHKWYEPEWWKFGDGKTYFRH
ASGEMFVISKAVAQFISINRSVLRTYAHDDVSVGSWLIGLAVKHVNEAKLCCSSWPSVCGRMRR
VGFT*(+)
MALAGSPVELFNQVNPTLRILPQTEGQDEQHSFASFTCFTARPINHDPTLTSSCAYVRRTDLFI
EMN*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017