Detail information of 5_circ_ag.11


General Information
CircRNA Name 5_circ_ag.11
ID in PlantcircBase ath_circ_036922
Alias NA
Organism Arabidpsis thaliana
Position chr5: 2471693-2476682  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method CIRI
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 5_circ_ag.12 5_circ_ag.13 5_circ_ag.14 AT5G07770_circ_g.1 AT5G07780_circ_g.1 AT5G07780_circ_g.2
Support reads 4
Tissues root, inflorescences
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGCTGCAGTCATGGCAATGGATGAGTCTGTACTAGATGTTGATCAAATAGAGAATCTTATACAA
CTTTGCCCAACAAAGGAGGAGATGGAGCTTCTTAAGaactatactggtgacaaggcaaccttgg
gaaagtgtgagcaggtctgtctttaagtctttagattaccaatctcacactgtttttattttcc
actataat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AACTATACTGGTGACAAGGCAACCTTGGGAAAGTGTGAGCAGGTCTGTCTTTAAGTCTTTAGAT
TACCAATCTCACACTGTTTTTATTTTCCACTATAATATAGTTCTTAACAATTTGCTTAGTTTAG
CTAAAGCTAAAGTTCCATTAAAAGAGTATTTACGTGTGATTAATGCGTTTTCTTCTCTCATCCA
TTTTGCTTCCGCAGTACTTCCTAGAGCTAATGAAGGTTCCAGGAGTAGAATCGAAGCTGAGAGT
GTTTTCCTTCAAGATTCATTTCGGTACTCAGGTCTGGTGGTATTTACCTATAACGTTTTGGTTT
TTGTCAGTGTCTAAGTAACTGTAGATTCTTGATCTCCTTTTTTATGATGATTACTTTGCAGATA
AAAGAACTTAATAAAGGTTTAAATACCGTAAATTCTGCATGTGAGGAGGTAAGATATTTGCAAT
ACTTAAAACTCAATAATTTACGCAGCCCATTTGCGTTTATCTTTCTTAGACATTTTCTCCTTAT
TGCTTGTTTATCAGATACGTACTTCACAAAAGCTAAAAGAGATTATGAAAATTATTCTCTGCCT
GGGGAACATATTGAACCAAGGAACTGCCAGGGGTGAGTATTATAATTATTTTCTTACCCAAATA
TTTTTTTTCTGTAGCTTAAGACATAACACAATAAAATTTCTCTGTTCAATGTGGGCTAAGTTCA
AGAATGGCGCCTTTGTTTCATTACATCATAAATACTTGTTTTGTATGAACGCAAATCCTTTGTG
GTTGATAAAGACCCTTTGCTCTGCTTTCTGCAGGCAGTGCAGTGGGATTCAAGTTGGACAGTTT
ATTGAATTTAAGCGAAAAATGTTCTGCTAACACCAACATGACTCTCATGCATTATCTTTGCAAG
GTAAATTTCAATCAAAAGAAGTAGAATCTATTTATACTGAAACCCCTAATCTTTCTTTTTCTCA
GGTCCTTGCTTCCAAGGCATCAGATCTACTGGACTTCCATAAGGATCTTGAAAATCTCGAATCA
GCTTCAAAGGTTTGCATTTGTACGTACTTTTTATCCGTTCTTAGCTGTAATTGGCTCATCATTT
GATTGTCCTGTTGATTCAGATACATTTGAAGTCGTTGGCTGAGGAAATGGTAGCTATAACCAAA
GGACTCCAAAAACTGAACCAGGAGCTTACCGCATCCGAAAGTGACGGTCCTATTTCTGAAGTTT
TCCGTAAAGTATGTTGTTGTTTTTCAATCTTATCCATCTTTTATCAATCATGAATTTGAGATTA
GGTCTATCACTTTGCCACATTACTAAATCTGCTTCCATCATTTTGTAAAATCAATAACAGCTAG
AAATAATTCTTCAGCTAAGTTTGTTTTTTCCTACATAACTTCTTCCGGACGCTAAAATCTAGTT
TTATGTTTTCGACAGTTATTGAAGGACTTCATATCCGTTGCTGAAACTCAAGTAGCAACTGTAT
CGAGTCTTTACTCCTCAGTGGTAATTTTTGTCAACCTCTACTAGATTCCAAGTACCTTACATTT
AAAAATGTGTTTGATCCTGAAATTAATTACTTTTGTTTTTGAATCTTATGATGGTGGACCACAG
GGAGGAAACACTGATGCACTTGTACACTATTTTGGCGAGGATCCGAACGATTATCCATTTGAAC
AAGGTATACGATGAACTTCATCATCCTCATTTGTGCTAATATACATAAAAAGTGGCTGGCTCAT
TGTTTTTACGTAGCTAATAACAATACATGATTATCGATATTGCCTGCAGTTACCGCGACCCTCT
TGAGTTTTGTAAGGTTGTTTACGACAGCAGCACACCAAGAGAATGTCAAACAAGCGGAGTTGGA
GAAGAAGAAAGCTGCAAAGGAAGCAGAAATGGAGAAGACGAAGAAACGAGTCAGTCTCACTAAT
AAAAAAGCAAGCGGAGTTGGAGAAGAAGAAAGTTGCCTTATATAACTGACCATAGTGTGGTAAC
TCAGATATTTTGTGTTGATTTAAACAAGCGATGGAAATATTTTCACTGTTTGGTGTTGTTAATA
TGTGTGTGGTTACAACCACGTTTTTTTTTTACGATCAACTTGTGCTTTTTCCCATCTGTCGAAA
CACGTTATTATTGATTTTTAGTAATCCCCAATTGCAATTATTGTATCACATTCATATTTACAGT
AGTTTATAATTGAATCGGTATTAGTGAACCATATATTAAAATTTTAATCAGCGAAGACCCATAT
ATTAAAGGTTGGGCTTAATTTACTTAAAGGCCGGCCCATTGATGACTTACGGAGTCACGTGAGA
CGTGACATTCTCCTTATGGGTTCTTTGACTTTTGTTCATTTCAATCCTTGGCCAGTTTGGTCTT
TCTCTTCGTCGACTCTTTTGCTGAATGTGATTTCGAAGTTTTGTGTGAATGAATCAAAATCTTC
AGATAAGTCGGAATCAAACTTTTAATTTAATTTCAGACAGTATGACACATGTGACATGTCATGT
CTCTCCCCTCAACTCTTGCCATGTCTTCGTCTGTAAGTTTCCTGAGAATATTCTCCATTTTCCT
GCAATCCAATCTTCTCTCTTCTCCAATGATAATGGCCCAGCAGATCTCGGATACGCTCTTCTTG
CTTAATCGAAATTGAAATTAAAATAAAATATTTTAGTGCTAACAAATGTTTCATTACACTATGT
TCTTCTAGGAATCTAGTTCAAAACTTCATTTTTTTCTCTTAAACTTGCTTCTAGGTCTGTAATG
CTAATTTTATTGTTTTGTAATGGAAAGGATGGTCTAACCGACACATATATAAAGGAGTGGGGCT
TGGTTTAGTTAGCGGCCCATTGGGCTTCCTGACTTTGTTGTTTTGGGTAGATAATAAATTCGAT
GCCGTTATTGATTAACTATTCAAAAAATGGATCAGACAATACTCTCTGTCTTGTCTTATCTTGT
CGTCCCTCCAATTTTGGACAAGTCTTTTCCACAAAGTCAACTGTGCTGCCATTGATCATTCTCT
TTATATTTTTTCTGGGAATTTTTGCTCTGAACTAGTGTTATTTGCTCTAAATCGGTGAAGAAAG
CAGTTTGCTATTAAATCTCTCTACTAAATCATCTGTTTGGTTCCTGATCCAATGTCCCCTGTCG
AGATCACTGGCGCTGATGCCGTGGTGACGCCTCCTATGCGTGGAAGAGTACCACTTCCACCACC
GCCTCCTCCTCCTATGCGTAGAAGTGCACCATCACCTCCTCCTATGAGTGGAAGAGTACCACCA
CCACCACCTCCACCTCCGATGTTTGATCCCAAGGGTGCAGGAAGAGTTATTTGTTGTCTACGTC
CAGGTCAAAACAAGTCTTCTCTGAAGCGATTTCAATGTGGTAAACTAACAAATGCCTGGGAAGA
GTTACAGAGACATGGAGAAGCACAAACGTATTTAGACTAACTTTTTATGTTTGCGTTCCTTTTT
TTCTTCTGCACCAGGCAGATATAATTGCCGAGTTATTAGACAATTATATCCTCATATTATTCCT
TTTTCTTTCCATGATAGTGCCCCAGAATTTGATCTATCAGAGATAGAGGCCCTTTTCTCTGCTG
CAGTACAAAACCAGGCTGATAAATCTGGAAGTCGACGAGAAGCTTTTGAGGCAAACCCCGATAA
ACTTCAACTGGTAATGTGAAATTTATATTCTTCTTTTAACATTTGGTTATTACTATTGTCATAT
AGCTATAAAAACAAGCGACTGAAAAGCATGTTATGAAATGCCAGAAATCTGAGTAATTTTAATA
AGAATGTCTCTATAAGCATGTTATTAATTTGAAATTGCCAACACTCTGTCTTGTAGTCTGTTCA
AAGTCTTCTGCAACTGTGCTTTCACAAGTCTATGCGATTGATCATTCTCCTATATTTTCTGGGA
TTGTTTTGCTCTGAACTAGTGTTATTTGATCTAAATCGGTGAAGAAAACTGTTTGTTGTTAAAT
CTCTCTATTAAATCGTCTGTTTGCTTCCTGATCCAATGTCGCTTGTCGAGATCTCTGGCGCTGA
TGCCCTGGTACCACTACCACCACCTCCACCTCCTATGCCTAGAAGATCACCTCCACCACCACCT
CCGAGGTTTGATGCCTTTGATCATAAGGGTGCAAGAATGGTTTGTGGTTTTCGATGTCCAGTTA
CAAAAAGGTCTTCCCTGAAGCCTTTACATTGGGTTAAAATAACAAGGGCTTTGCAGGGGAGCTT
ATGGGATGAGTTACAGATACAATATGGAGAATCACAAACGTATTGAACTTAACTTTATTGACCA
ATCCATGTAATTCAATTCTGTGATACTGAGTTTTCTTTTATCAACCATTGCTTTTTTTTTTGTT
GTTGTTGCTAGTGCAATAGAACTTGATGTACCAGAAATAGAGACCCTTTTCTCTGTTGGGGCAA
AACCAAGACCAAAACCAAAACCTGAAAAAGTTCCACTGGTAGGTAATGTGAAATATTCCCAACA
CAGTTGGTTATTGTCAGATATTTTAACTTGCTCTTTTCTGGTGGAGACTTTTGTCATGTAGCTA
TAAACAAGTAGTATTACTTTCTGGTGGAAACTGTAAAATATTTTGTTTTTTAAGTTGTACTAAG
CTACTCTCCAGCATCTCTTTCCCTTAGACTTTCTTCTACTCCGAAGCCTATTGCATGTCTGTAT
ACTTTTGTGAATTCATTTTGGAGATTTGTTTGTCTTATGGTCTTCCAGATTGACCTTAAGAGAG
CCAATAACACGATAGTTAACTTAAAGATATTAAAGATGCCGCTGCCTGATATGATGGTAAGCTC
CAAAACCTTAATTACCTGAGTAAAAGTCAATTACTGGTTAATCTTTCATAGCTTAATGATAATT
ATCCACATTTTTCTTTGCATCGTCCAGGCTGCAGTCATGGCAATGGATGAGTCTGTACTAGATG
TTGATCAAATAGAGAATCTTATACAACTTTGCCCAACAAAGGAGGAGATGGAGCTTCTTAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.356005491
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017