Detail information of Os09g0491788_circ_igg.3


General Information
CircRNA Name Os09g0491788_circ_igg.3
ID in PlantcircBase osa_circ_039677
Alias Os_ciR1625
Organism Oryza sativa
Position chr9: 18998235-19004780  JBrowse»
Reference genome IRGSP-1.0.38
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os09g0491788_circ_ag.1 Os09g0491788_circ_igg.1 Os09g0491788_circ_igg.2 Os09g0491788_circ_igg.4 Os09g0491822_circ_g.1
Support reads 8
Tissues root
Exon boundary   Yes-No
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCCGCCGTCAGCGAGCCGCCGTCGAGCACGTCGGCCTTGAACAGGCGCAGGTTCTCCGGGGCGT
TCTCCAGCTGCTTCAGAAACGCGTTCTTGGGATCATctgggtcgcggagggtggcgtggacggc
gtagccacgggagaggaggagcttgacgagccacgagccggtgaacccgccggcgccggtcacg
cacacggg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs osi_circ_008138* osi_circ_018602 osi_circ_018603 osi_circ_018604
PMCS 0.724498457
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015