Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | AT1G06950_circ_g.5 |
ID in PlantcircBase | ath_circ_001079 |
Alias | Ath_circ_FC4919 |
Organism | Arabidpsis thaliana |
Position | chr1: 2132479-2133805 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, PcircRNA_finder |
Parent gene | AT1G06950 |
Parent gene annotation |
Protein TIC110, chloroplastic |
Parent gene strand | - |
Alternative splicing | AT1G06950_circ_g.2 AT1G06950_circ_g.3 AT1G06950_circ_g.4 AT1G06950_circ_g.6 AT1G06950_circ_g.7 |
Support reads | 6 |
Tissues | inflorescences |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT1G06950.1:5 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 0.192923958 |
Functional Information | |
---|---|
Coding potential | Y |
Potential coding position |
2132912-2132481(-) |
Potential amino acid sequence |
MDDLKLLYRAYVTDALSGGRLEENKLVAMSQLRNILGLGKREAEAISVDVTSKSYRKRLANAVS SGDLEAQDSKAKYLQKLCEELHFDAQKAGAIHEDINVENLVDLRKSQLSFKLSDELAEDLFREH TRKVVVENISSALSILKSRTRAAKSLASVVEELEKVLEFNNLLVSLKSHSEADQFARGVGPISL IGDESDFERRMDDLKLLYRAYVTDALSGGRLEENKLVAMSQLRNILGLGKREAEAISVDVTSKS YRKRLANAVSSGDLEAQDSKAKYLQKLCEELHFDAQKAGAIHEDINVENLVDLRKSQLSFKLSD ELAEDLFREHTRKVVVENISSALSILKSRTRAAKSLASVVEELEKVLEFNNLLVSLKSHSEADQ FARGVGPISLIGDESDFERRMDDLKLLYRAYVTDALSGGRLEENKLVAMSQLRNILGLGKREAE AISVDVTSKSYRKRLANAVSSGDLEAQDSKAKYLQKLCEELHFDAQKAGAIHEDINVENLVDLR KSQLSFKLSDELAEDLFREHTRKVVVENISSALSILKSRTRAAKSLASVVEELEKVLEFNNLLV SLKSHSEADQFARGVGPISLIGDESDFERRMDDLKLLYRAYVTDALSGGRLEENKLVAMSQLRN ILGLGKREAEAISVDVTSKSYRKRLANAVSSGDLEAQDSKAKYLQKLCEELHFDAQKAGAIHE( -) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
---|---|
References | Chu et al., 2017;Chen et al., 2017a |