Detail information of AT1G10290_circ_g.7


General Information
CircRNA Name AT1G10290_circ_g.7
ID in PlantcircBase ath_circ_001849
Alias NA
Organism Arabidpsis thaliana
Position chr1: 3372264-3376725  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer, PcircRNA_finder
Parent gene AT1G10290
Parent gene annotation DRP2A
Parent gene strand +
Alternative splicing AT1G10290_circ_g.4 AT1G10290_circ_g.5 AT1G10290_circ_g.6 AT1G10290_circ_g.8 AT1G10290_circ_g.9 AT1G10290_circ_g.10 AT1G10290_circ_g.11 AT1G10290_circ_g.12 AT1G10290_circ_g.13 AT1G10290_circ_g.14 AT1G10290_circ_g.15 AT1G10290_circ_g.16 AT1G10290_circ_g.17 AT1G10290_circ_g.18 AT1G10290_circ_g.19 AT1G10290_circ_g.20 AT1G10290_circ_g.21 AT1G10290_circ_g.22 AT1G10290_circ_g.23 AT1G10290_circ_g.24
Support reads 10
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT1G10290.1:16
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAGAAACAATCCTCTCTTCTTTCTAAACTCACGAGGCAGCTTAGCATTCACGACAACCGAGCAG
CAGCTGCTTCAAGTTATTCGGACAACAGTGGCACTGattgctgaatacgcgcaacacaatgatg
ccatactgctggttatagtgcctgctagccaggcatctgaaatttcatcatcccgagccctgaa
gattgcaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATTGCTGAATACGCGCAACACAATGATGCCATACTGCTGGTTATAGTGCCTGCTAGCCAGGCAT
CTGAAATTTCATCATCCCGAGCCCTGAAGATTGCAAAGGAGTATGATCCAGAGAGTGAGTACAT
CTGTATTTCCGATCTGTCTTATCTTAATATTGTTTATTATTTGTATACCTGATAAGAACTGTTG
ATTTACCTACCTATTATCACTTCAGTTTGCTTAAAATACTCATTAGCTAACATCACTCCTCCCT
ACTTATAGGTACTAGGACAATAGGCATTATTGGAAAAATTGACCAGGCAGCAGAGAACTCGAAA
GCCCTTGCAGCTGTTCAGGCTCTTCTTTCAAATCAAGGACCTCCAAAAACAACTGACATTCCAT
GGGTTGCTGTTATTGGCCAATCCGTTTCAATTGCGTCAGCACAGTCTGGAAGTGGTGAGAACTC
CTTAGAAACTGCTTGGCGTGCTGAGAGTGAAAGTCTTAAGTCCATTTTGACTGGGGCTCCACAA
AGCAAGCTTGGCAGAATTGCGTTGGTGGATACCCTTGCTAGCCAGATTCGTAGCAGAATGAAGC
TCAGGCTTCCAAGTGTCCTGTCTGGGTATTGCTTCTCTCCATATATGTGCTTTCTTCATGATTT
TTATTATGGTGTTGGCATATGACATTGGTTGCTTGAACGCATATGGCTTTCAAATTCTTTGTAC
AGGCTCCAGGGTAAGTCTCAAATAGTGCAGGATGAGCTAGCGAGGCTTGGTGAACAACTAGTTA
ACAGTGCTGAAGGTACAAGGGCTATAGCTTTGGAGCTTTGCCGTGAGTTTGAAGACAAGTTTCT
TCTGCACTTGGCTGGTGGTGAAGTAAGTACATTCTTACAAAAGTTAACTAGATTTAGTCGAAAA
TTCAAGAATATAGTGAGAGAGAAGAACTCTTCAAATATTAGCAATCAGCCATTTCAGATTTGGT
ACTAGTGTAGTGGAAAGTCTCTTGCTAGCCTACGCTTGGTAAGAGCACATTATATTGTTGGGAA
TCTCATGAATCTGATAGTGGATGTTTATAATATGTGTATAAGCCAACTGAGTGTTTGATATAGA
GTTTTTGTACTTGTCTGTGTTCAGTTTATGGGCTGAAGTCCCTTTTGGAGCTTGGCAAATGTTT
TTCTCAAAACTTTTTGATTCTTGTTCAGGGAAGTGGTTGGAAAGTTGTTGCAAGTTTTGAAGGA
AATTTCCCCAACCGTATCAAGCAGCTTCCATTGGATAGACATTTTGACCTGAACAATGTTAAAA
GGGTGGGTGTCTTCTTCTGTCCTAAGTTTCTGCACGAGACAAGTTTTGAGACTTGATTTGTCAA
AATATCTTTGATTTTCAGGTTGTTTTGGAGGCAGATGGTTATCAACCTTATCTTATATCTCCAG
AGAAAGGGTTGAGATCGTTGATAAAGATTGTCCTTGAGTTGGCTAAAGACCCGGCACGCCTTTG
TGTTGATGAGGTGTGCTTGTTTACATGTTTTTTTAGGTACATGCAGTAGGATTGAATTTTAGAA
ATTTACTGCATTGTGAACTGGCTATGGCTTGTCTCACTTTAATTCTTCGAACTGTTATTTAGAG
TTCTGTCAAGTTTTCTGGTTTATAAGCCTTAGTAAGTTAATATCCCTTACCGTAGATGTAGCTA
TTTTTTGGTTCCTACTTTAAAACTCATGCATCCAGCTTCTGTCTTATTTACGTGTTGAGCTAAC
ATGGTCTTAACTTTTGATTAGGTTCACCGAGTTCTTGTTGACATAGTTTCAGCTTCTGCAAATG
CTACACCTGGACTTGGGAGATATCCTCCTTTCAAGCGAGAGGTAATAATGATTTTTTGGTGCTT
TATTCAGTAATATTTTATCATTTCGGTAACAGTTATTCCTTTCTGACTAATCATCAACCAGGTT
GTAGCTATAGCAAGTGCAGCACTTGATGGTTTCAAGAATGAAGCCAAGAAAATGGTGGTTGCAC
TAGTTGATATGGAACGCGCTTTTGTACCACCTCAACATTTTATCCGTCTTGTGCAAAGGAGGTA
TTTTGGCTTGTCTTTCTTTGCAATTTTTGTTTTTATTTTCAATGGTTCATGACTGAAAATTATT
TCTCTTTCTGACGATGCACTGTATTGACTCCATCAGAATGGAAAGACAACGTCGCGAGGAAGAG
CTGAAAGGGCGATCTTCTAAGAAGGGACAAGATGCAGAGCAGTCCCTTTTAAGCAGGGTGTGTG
TTCATTCTGTATCAATTTGGATATACGTAGTGAAAAATGTTTTTTTTTTTTTTTTATCGTTTTA
CATGAAAATATATAATGTGGAAATTCTCTACATATATGTTTATCAGGCTACTAGTCCTCAGCCA
GATGGGCCAACAGCTGGTGGTAGCTTAAAATCAATGAAAGACAAACCTAGTCCGCAAGATAAAG
AGACGCCGGAGGTCTCTGGTCTGAAAACTGCTGGACCTGAGGGGGAGATAACAGCAGGTTGTTA
TTCTAATATACATCTACCCAGTTACTGTCTAAAAAGTTTCATTCTGCTTTTTCACTCCCGATTT
GCTTTCCTTACGTTGCATGATTTTATTGCTGCAAAGCTTTGCTCTTAGTCCAAGTGCATGATTT
CTTCATGTCTTTTTCTTCTTTATCACTTAAAACTAACTTGACAAAACTAACTTCCAAGGTAGAT
AACAAATACTTACTCTTTTCATTTAGGGTACTTAATGAAGAAAAGTGCAAAAACAAATGGGTGG
AGTAGGCGATGGTTTGTTCTGAATGAGAAAACTGGAAAGGTCAGCATTTTGAAACGTATATTCT
TCAGTTGTTGAGAACTTACTGACTTTACTGTTTACCTTTTTCTAGCTTGGCTATACCAAAAAGC
AAGAAGAAAGAAACTTTCGGGGCACGATAACTTTGGAGGTACCATTCTCTTCCTATGCTTTATT
TTCTGCCAAAGGTGAACTATAATTAGATATGACATGGAAAAAAGAATTAGAGAAGAATATAGTT
CGTATTCACCTTGTTATTTTCTCCCACACTGTTTCCTTCTTGGAGAGTGACAATTACTTGTGTA
TTTTGAAGCTTATGCTTCAAATATTTAATAGTTCTGTTATTATCGATGAGAAATTTGGATACTC
TATAGATAACATTTTTTCCATGTTTTTCTAATTATACTTCCTCCAACTTTATTAATCCACTCAG
GAATGCACTATTGAAGAAATCCCCGAGGACGAAGTAGAAAAGTCAAAGAGCTCGAAGGACAAGA
AGGCAAATGGACCTGATTCAAAAGGACCAGGCCTTGTGTTTAAAATAACCTGCAAGGTTCCCTA
TAAGACTGTACTCAAAGGTACATAAATCAATCATTATAAGAATTCAAACTTCTTAATCTTCTAT
TCGCACTTTTATGAGTTTTCCTCAAACTATTATGTTGCAGCTCACAATGCCCTTGTGCTTAAGG
CTGAGAGTGTAGTCGACAAGAACGAGTGGATTAATAAGTTGCAAAAGGTTATCCAGGCTCGTGG
AGGCCAAGTGGGCAGTGTTTCCATGAGGCAGAGTCTTTCAGAAGGTTCACTTGTGAGTCACTCA
TGGGCAGCTTTTCTTACATTTCCTCTTCCTTAAATCTATGTTAGATACGTTCACTAGTCTTATG
GATTACTTATTATCACTATGAAGAAAGTTTGAAACTTCACTTCGGAAGGTTTGAAACTGTTGGA
AGAGCAAACAAAGCTATTTATGTTTTATTGAACATTGTCGAATTTTTATTATTGAAACATTTTT
CCTATAGAAGGCTCAGTTTATGGGGTATGCATGATACTACTTTTAAACTTGACATAAGTTATGT
TTGACATTTAAGGTTTTTATTGTTTATAATATTTTCTGAGACTTACGTTTTTTTCCTTGTCTGT
ATTTCAGGATAAGATGGTTAGGAAACCCATCGATCCAGAAGAGGAGCTCCGGTGGATGTCCCAA
GAAGTACGGGGTTACGTTGAAGCTGTTCTTAACAGCCTTGCAGCCAATGTTCCAAAGGTGAACT
ATCCTTATGCAAAAGCTCGAAAGCTCTAAATTTTCTTGTCCATCTCTTTTCTCTTACAGAGATT
CCTCGGTCATGCTACTAAGCGATGTGAATTGACCATGAACAGGCTGTTGTTCTTTGTCAAGTAG
AGAAAGCAAAGGAAGACATGCTGAATCAACTCTACAGTTCTATAAGGTTCAATATCTTTTCGTT
CCCTGTGCCTTGTTTCGTTTCAGTTGTGGTGTGCTTACTTGTGCTCTCCTGTATTTGATCTTTA
GTGCAATAGGCAATGAAAGGATTGAGTCATTGATACAAGAGGATCAGAATGTCAAAAGACGAAG
AGAGCGTTACCAGAAACAATCCTCTCTTCTTTCTAAACTCACGAGGCAGCTTAGCATTCACGAC
AACCGAGCAGCAGCTGCTTCAAGTTATTCGGACAACAGTGGCACTG
Conservation Information
Conserved circRNAs NA
PMCS 0.133515456
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017