Detail information of GLYMA_19G263500_circ_g.1


General Information
CircRNA Name GLYMA_19G263500_circ_g.1
ID in PlantcircBase gma_circ_007705
Alias gma-circRNA2682
Organism Glycine max
Position chr19: 50620215-50623395  JBrowse»
Reference genome v2.0.38
Type   e-circRNA
Identification method find_circ
Parent gene GLYMA_19G263500
Parent gene annotation hypothetical protein
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues flower bud
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered KRG97303:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAAAGCTGATTAGTACATCCTCAAATTGCATGCCTTCCAACTGTGGCCATCTTTTGATGTAGAA
TTCACAATTTTCAAATCCAAGTATATCTTCCCAAATtgaatcaaatgattccaatggaaggctt
tccaagtggcgacgtataacagcattcccctcacgattaaccagagatatattttccaatcgat
ttatgtca
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 543
Transcript exons: 50620215-50620409,50620820-50620918,50623147-50623395
TGAATCAAATGATTCCAATGGAAGGCTTTCCAAGTGGCGACGTATAACAGCATTCCCCTCACGA
TTAACCAGAGATATATTTTCCAATCGATTTATGTCAAGGCCACCATCAGTTAGCTTCTTTTCTC
TTTCTTTTTCTGGAACATCATTGAACATCCAGAGTTCTGACCCATGTGCTAAAGATGCATCCAA
AACCATGATCATATCCTCCATATCACGCCTCCAACCACAAAAAAGTATTCTCTCTGGAGATTTT
GGATAAACAAAGTCCTTGGGTAAGCTTCCTCTCCAAACCGTAGGCAAGGATGCTGGGGCATAGG
TATCATCATCCTCTGCAATAACCAGAATCTCGTCACCTTCTTGCAGAACATAGGAGTCATCTGG
ATTCAAAATAATTTTACCGCCATATGATGCAACTTTGATTCCACAAGGAATTGCAGCAGGAAAG
CTGATTAGTACATCCTCAAATTGCATGCCTTCCAACTGTGGCCATCTTTTGATGTAGAATTCAC
AATTTTCAAATCCAAGTATATCTTCCCAAAT

Genomic sequence TGAATCAAATGATTCCAATGGAAGGCTTTCCAAGTGGCGACGTATAACAGCATTCCCCTCACGA
TTAACCAGAGATATATTTTCCAATCGATTTATGTCAAGGCCACCATCAGTTAGCTTCTTTTCTC
TTTCTTTTTCTGGAACATCATTGAACATCCAGAGTTCTGACCCATGTGCTAAAGATGCATCCAA
AACCTAAACCAACAGTGAGAATTTGGACAGGCCCAAAAAAGTATTAATGCCCACCACAAATAAA
CAGTTGCAGGGACAGAGGGATGCATGACATCCCGAAACTTGCAAAAAAAAATTGTTTAATATAT
CATATTATGTGTAATTTATTTAACATCTCTAACAAAGGTTTTAAAAAAAAAAAATTTTAAGTGT
TAGAAACCGAGTGTAGATGTAAGACAAGCCAGTAACTTTCAAATCCAAAGAATCAAGAAAGATG
CTGATAGTTGCAGAATTAATAGCAGGCTCACAGTCAAATTCAATGTTAAAAAAAATAATAGGAA
ACTTTTTATAATTTGTCTTTGCCATTTCATACACTATGGTAACTGAAGTAAAGAAAAATAGGGA
CCATAGCAACAAATTTCTTATATTATTACCATGATCATATCCTCCATATCACGCCTCCAACCAC
AAAAAAGTATTCTCTCTGGAGATTTTGGATAAACAAAGTCCTTGGGTAAGCTTCCTCTCCAAAC
CTGAAATCAACAAGGAAAAGGGGCAAGGAACCATATCATTCCATCTCTCTCATTCATCAAAAAC
ATAAAATGGTCTTGACTTCCTTGGCTTTACTAATCTCAGTGTGTAAAAATTATCACTGTTAGCC
ATTGATAAGTAAATTTATTGTAATTCAATTATCAGCTGTGCCACACTTAAAGCCCACTACAGAC
ATTGTTATCCAATGAAAAGAATTTAGTAGAGATTTGTCGAGCTATAAATTAAATGTAAAATATT
TTAGTGTATCAAGTTTGAAATCAACTCCGCCTATGTTTCTTCATAGCTGTTTCCAAGCCCCGGT
TAAGGAGGAGGGTTGTATTAAGCCCTCGGCAGCCAACATAAAACTCGTCGTTATACCAAACATG
GATTATTCACAACAGGTTTCTGCTAATGCTAGGTCGTTATACGAAAGTAACAAGCGGTCCGCTT
TCTTTTAAACTTTTTTTAAGGTGGTGTATGAAATTTTCAATTTTTTTTAATAAAGACGAGGTCA
TGTGGTTCAGTTAGTGACCCGTTGGTTCAACCATTAACCCAATGCCCTGATTGGTTCGATATCC
AGTTCGGTTTTTAAAACTATGATATCGTCTGGATATAGTGTCAAATGAGCAAGGGTCGCTACAT
TGGCGCCCGGATGTAGTGTTAAATGAGCAAGGGTCCTTACATTTTTCTAGACGAATGTGGGTAA
GGAAGCTAGTTCAGAAGTGTTCGATAAGATTTGCTACTTTGACACCTAAGTCTATCGAGGAGGT
GGACACCATGATTCAGAGAAGGATTAACATTATGTGCCTACAAGAGACTAAATGGGTAGGAGTA
AAAGCCAAGGAGATGGATATTGCAGGTTTTAAGCTTTGGTACACAGGAAAAGTTAGAGGAAAGA
ATGGAGTAGGTATTATGGTGGAGAAGGTTTGGAAAGAAAGTGTGGTGGATGTAAAAAGAATTCG
AGACAGAATCTTAGCCTTAAAATTATTGATGGCACAAGAGACTATCAATATCATTAGTGCTTAT
GCACCACAAGTAGGATCAAAGGCACTTGAGAAGGAAAAACTTTGGCAAGACTTAGAGGGGTTGG
TTCAAGGCATTCTGCAACAGAAGATTTTCTTAGGTGGGGATCTAAATGGACATGTTCATAGTCA
GAAAAGGCATTTTACAGGTGCACATGGTGGTTTTGGTTTTGGAGATCTAAATGAGGAAGGATAG
ACTATTATTGACTTCTCTATGGCTTATGATGTTAGGATTATGAACACTTGTTTCTAGAAAAGGG
AAGAACATCTTATAGCATATAAAAGTGGAAACTCAAGGTCGCAGATGGATTTTTTTTTGTATGA
GAAGTGCTGACAAAAGGGTTTGTAAGGGTTGCAAGGTGATCCCAGGAGAGAGTCTAACTACACA
ACATAGGGTTTTGATTCTTGATGTTCAGTTCAAAAGGAATATACAGAAAAACAGACAATATACA
AATCCAAGGATCAAGTGATGATATTTGAAGGGAGATAAACTTTTAAGAATGCATATCTCCATGG
TGCCCTAACTGAAAAAATCTACAAGTATTCCATCAGGTTTTGAAGGATACATAAAATAAATAAC
AAAGGGTGCAGGCTTCGGAAAGCTCTTCATGAATTAAACCAGTCCCCTGGAGTTTGGTTTGGGA
GGTTTGCAAAGGTTATGAAGGAGTTTAGGAACAAACAAAGCCAAGGATATCAAACATTCAGTAA
TTTCCATGATCTAATTACCAAGCTAGGAATGAAAGACATGTCTTCTTTAGCTTGAGGGGGGTGT
CAACCTGTAAATGTAGATATTTTAAATTAAATGTAAAAATGTAAATTATTCTAGGGTACCAGCC
TATCAGGTTTGAAATTCCTATAAATAGAATTAAAGGATTCTGTTTAGGAGTCTGTCTAGGAAGT
TATTTCTAATTGTTAGAAGATTTTTTCTGATTATTCCAGGTGATTTGTTTCCTTCTATGTAACC
TTGTACCATGATATAAATACCTGTGTAATATCATTTTGAAATTATCAACGAAAATCATTCTATT
CTCTCTTCAGATTGTGATTTTCCACAAAATTTATTAGCACTTATTGCATACCAAATTAGCTCAA
ATAAACTTGATTTTTTATTACCATTTGACCATGTATTTGCCATGAACAAACCATGGAACAAATG
TTAATAGAGAAAAAGAGAACAGAAAAACAACAATTTATGTGAGACAAAGCACCGTAGGCAAGGA
TGCTGGGGCATAGGTATCATCATCCTCTGCAATAACCAGAATCTCGTCACCTTCTTGCAGAACA
TAGGAGTCATCTGGATTCAAAATAATTTTACCGCCATATGATGCAACTTTGATTCCACAAGGAA
TTGCAGCAGGAAAGCTGATTAGTACATCCTCAAATTGCATGCCTTCCAACTGTGGCCATCTTTT
GATGTAGAATTCACAATTTTCAAATCCAAGTATATCTTCCCAAAT
Conservation Information
Conserved circRNAs NA
PMCS 0.203338528
Functional Information
Coding potential Y
Potential coding position 50623328-50620217(-)
50620269-50623307(-)
Potential amino acid sequence MQFEDVLISFPAAIPCGIKVASYGGKIILNPDDSYVLQEGDEILVIAEDDDTYAPASLPTVWRG
SLPKDFVYPKSPERILFCGWRRDMEDMIMVLDASLAHGSELWMFNDVPEKEREKKLTDGGLDIN
RLENISLVNREGNAVIRRHLESLPLESFDSIWEDILGFENCEFYIKRWPQLEGMQFEDVLISFP
AAIPCGIKVASYGGKIILNPDDSYVLQEGDEILVIAEDDDTYAPASLPTVWRGSLPKDFVYPKS
PERILFCGWRRDMEDMIMVLDASLAHGSELWMFNDVPEKEREKKLTDGGLDINRLENISLVNRE
GNAVIRRHLESLPLESFDSIWEDILGFENCEFYIKRWPQLEGMQFEDVLISFPAAIPCGIKVAS
YGGKIILNPDDSYVLQEGDEILVIAEDDDTYAPASLPTVWRGSLPKDFVYPKSPERILFCGWRR
DMEDMIMVLDASLAHGSELWMFNDVPEKEREKKLTDGGLDINRLENISLVNREGNAVIRRHLES
LPLESFDSIWEDILGFENCEFYIKRWPQLEGMQFEDVLISFPAAIPCGIKVASYGGKIILNPDD
SYVLQEGDEILVIAEDDDTYAPASLPTVWRGSLPKDFVYPKSPERILFCGWRRDMEDMIMVLDA
SLAHGSELWMFNDVPEKEREKKLTDGGLDINRLENISLVNREGNAVIRRHLESLPLESFDS(-)
MLLYVATWKAFHWNHLIQFGKIYLDLKIVNSTSKDGHSWKACNLRMY*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description cytoplasmic male sterility
Other Information
References Chen et al., 2018