Plant Circular RNA Database

Detail information of Os02g0741800_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os02g0741800_circ_g.1
					
						ID in PlantcircBase
						osa_circ_016510
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr2: 31048067-31049995  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os02g0741800						
					
						Parent gene annotation
						
							Similar to Permease 1. (Os02t0741800-01)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os02g0741800_circ_g.2 						
					
						Support reads
						1
					
						Tissues
						shoot
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os02t0741800-01:10

General Information
CircRNA Name	Os02g0741800_circ_g.1
ID in PlantcircBase	osa_circ_016510
Alias	NA
Organism	Oryza sativa
Position	chr2: 31048067-31049995 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os02g0741800
Parent gene annotation	Similar to Permease 1. (Os02t0741800-01)
Parent gene strand	-
Alternative splicing	Os02g0741800_circ_g.2
Support reads	1
Tissues	shoot
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os02t0741800-01:10

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							ACATTGTTTCCTCCCATCTGCGGAACGAGTGCAGTTGGTATGATAACTGTAGTTCCCAGCATAA
CCAGATAATGTTGGAAACCAAGAAGAATGGCCTCAGccagaatagagaagaatatcatgaaacc
agctgatatctgcaccactcttcggctaccaacacgtgtcaaagctagcaatccagcattttca
ctacaggt

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CCAGAATAGAGAAGAATATCATGAAACCAGCTGATATCTGCACCACTCTTCGGCTACCAACACG
TGTCAAAGCTAGCAATCCAGCATTTTCACTACAGGTAAGGAAAAGAATGGTTGTATCAAATGAA
ATTAGATGTATTCTAATGAGAATGGAAGCTGTACCAAGATGAACATAAAGATCCATTCCCCCAC
GAGGTACCCATTCTAATGCTTACACTGATACAGAAGAACCATTTCCAGTCCCAAATAGCCCATC
CAACAAAATGCCAATGCCCTACAGCAAGATGAATTATATATGCTTCAAGTTGACTCCAGATTTG
CAAATTATCAAGACAAACTTGGAACATGGTGGATAAGCATTTACCTGCCAACCAATTCCACGGC
TAAGTACAGAGGGTGGGAGAGGTGTGGCACTAGCATACCTTGAAACAGCAATGAAAGCACCAGT
AGACTACAAAAATAATAGTTCAGGAGTTCATAACTCATTACTTCAGAATCCTCAGATTGAAATG
AAGTGCTGAAGTATTATTTGATTTTCCCAAGAGCATGGGGCCATACCTCCACCAGAGCAACAAA
TGAAGCAGCCATCATTGCAAAAGCTTCACCAGCATCAAAAGTTGGAGCACCCCATTGAAAGGGA
TAGGGAACTCTTATCCTGTCATTGTAGTTGTACAGAAGATAGGAAGCGGTCATGTTACTTTTAC
AACGAGAGTGGCACCAATGGAACAGTCATATTTTTCAAAAATATTACCAAGGAGCACCACCAAT
TATTCCAGAACGGTCAGTTCGGCAATGAAACTGGGTCTTTGGTGGTGCATTCCTGTACGCGCCT
CCAACTGTGAGCAGATATGCATAGAGCCACACTATAGGAATAGTGAACAGAACAGCAAAACGGT
CGAAGATAGACTTCATCATGTGTATAGCATGAGGCAGGTACTGCAAAAATGAAACAATAAAAAG
GAAAAAGGAAAGTTGGAGCACAGCGATGCTAGGTGAAGAAGGTGACAACTACATGATGGAAATA
AATGCGTACCATTGCGAAGATCACCAGGAGGATAAGTTCTGGAAGACCAATCTCAACACACTTG
GCAACCTGAGCAGTTAGTCTAAGATGAGCAATACAATATTTTAAACAAATATGGAGTCTTGAGT
GGAAACACAATACTTTACCGAGGGAAAACCAAGCTCATAAAGTCCAAAGCCGACTAGCATCACC
AGTGGAGCAGCTGACAATGGACTCAGATACCTGAAAGAAATCCAGTACATAGTAATGAGACTGA
AAACAAGATATTTTTTTCTGCAAGATCATTTCTTGCTTGAGTACCTCTGAAGCAGCTACTTGAT
TAAGAGAAAAAACAATGCCAATTACCAATGGTTCACCTCAGTACCTTGCAACATTACGCCAAAG
GCCACTGAAACCAAATATGATTTGTAGAGCAGAAGCCACGATCAATGCACCTTGTGTTCCACGC
ATGATTCGGAGGAATTTCTTCACATAAAAATAGGTGATCCATCAGGTCAAGAAACACAAAAACA
ATATCTGAAAGTAAGTAGCTACTGATTTTTAACATACTGTGTGTGGATTTGGTTCGTTGGCATA
ACGACCAGCAAGGATGATTGAGATGGTTGGTACAACAAATGTGTATGATCCACCAATCACCGCA
GGTAATCTGGTTCCAAAGAAACTCTGCAAAAGGGTGTTAATCCCAGCCACAAACAGCAATGTTT
GGATAACAACAGCCTTGTCCTCCTAACACAGTAAGAAATACTGTTAGTCTTGATTGATGGCTCA
AGTCAAAAGAAACACAAACAGGTAAATGTGTAATCTCACATTGTTTCCTCCCATCTGCGGAACG
AGTGCAGTTGGTATGATAACTGTAGTTCCCAGCATAACCAGATAATGTTGGAAACCAAGAAGAA
TGGCCTCAG
						
					

			
		

Sequences
Splice junction sequence	ACATTGTTTCCTCCCATCTGCGGAACGAGTGCAGTTGGTATGATAACTGTAGTTCCCAGCATAA CCAGATAATGTTGGAAACCAAGAAGAATGGCCTCAGccagaatagagaagaatatcatgaaacc agctgatatctgcaccactcttcggctaccaacacgtgtcaaagctagcaatccagcattttca ctacaggt
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CCAGAATAGAGAAGAATATCATGAAACCAGCTGATATCTGCACCACTCTTCGGCTACCAACACG TGTCAAAGCTAGCAATCCAGCATTTTCACTACAGGTAAGGAAAAGAATGGTTGTATCAAATGAA ATTAGATGTATTCTAATGAGAATGGAAGCTGTACCAAGATGAACATAAAGATCCATTCCCCCAC GAGGTACCCATTCTAATGCTTACACTGATACAGAAGAACCATTTCCAGTCCCAAATAGCCCATC CAACAAAATGCCAATGCCCTACAGCAAGATGAATTATATATGCTTCAAGTTGACTCCAGATTTG CAAATTATCAAGACAAACTTGGAACATGGTGGATAAGCATTTACCTGCCAACCAATTCCACGGC TAAGTACAGAGGGTGGGAGAGGTGTGGCACTAGCATACCTTGAAACAGCAATGAAAGCACCAGT AGACTACAAAAATAATAGTTCAGGAGTTCATAACTCATTACTTCAGAATCCTCAGATTGAAATG AAGTGCTGAAGTATTATTTGATTTTCCCAAGAGCATGGGGCCATACCTCCACCAGAGCAACAAA TGAAGCAGCCATCATTGCAAAAGCTTCACCAGCATCAAAAGTTGGAGCACCCCATTGAAAGGGA TAGGGAACTCTTATCCTGTCATTGTAGTTGTACAGAAGATAGGAAGCGGTCATGTTACTTTTAC AACGAGAGTGGCACCAATGGAACAGTCATATTTTTCAAAAATATTACCAAGGAGCACCACCAAT TATTCCAGAACGGTCAGTTCGGCAATGAAACTGGGTCTTTGGTGGTGCATTCCTGTACGCGCCT CCAACTGTGAGCAGATATGCATAGAGCCACACTATAGGAATAGTGAACAGAACAGCAAAACGGT CGAAGATAGACTTCATCATGTGTATAGCATGAGGCAGGTACTGCAAAAATGAAACAATAAAAAG GAAAAAGGAAAGTTGGAGCACAGCGATGCTAGGTGAAGAAGGTGACAACTACATGATGGAAATA AATGCGTACCATTGCGAAGATCACCAGGAGGATAAGTTCTGGAAGACCAATCTCAACACACTTG GCAACCTGAGCAGTTAGTCTAAGATGAGCAATACAATATTTTAAACAAATATGGAGTCTTGAGT GGAAACACAATACTTTACCGAGGGAAAACCAAGCTCATAAAGTCCAAAGCCGACTAGCATCACC AGTGGAGCAGCTGACAATGGACTCAGATACCTGAAAGAAATCCAGTACATAGTAATGAGACTGA AAACAAGATATTTTTTTCTGCAAGATCATTTCTTGCTTGAGTACCTCTGAAGCAGCTACTTGAT TAAGAGAAAAAACAATGCCAATTACCAATGGTTCACCTCAGTACCTTGCAACATTACGCCAAAG GCCACTGAAACCAAATATGATTTGTAGAGCAGAAGCCACGATCAATGCACCTTGTGTTCCACGC ATGATTCGGAGGAATTTCTTCACATAAAAATAGGTGATCCATCAGGTCAAGAAACACAAAAACA ATATCTGAAAGTAAGTAGCTACTGATTTTTAACATACTGTGTGTGGATTTGGTTCGTTGGCATA ACGACCAGCAAGGATGATTGAGATGGTTGGTACAACAAATGTGTATGATCCACCAATCACCGCA GGTAATCTGGTTCCAAAGAAACTCTGCAAAAGGGTGTTAATCCCAGCCACAAACAGCAATGTTT GGATAACAACAGCCTTGTCCTCCTAACACAGTAAGAAATACTGTTAGTCTTGATTGATGGCTCA AGTCAAAAGAAACACAAACAGGTAAATGTGTAATCTCACATTGTTTCCTCCCATCTGCGGAACG AGTGCAGTTGGTATGATAACTGTAGTTCCCAGCATAACCAGATAATGTTGGAAACCAAGAAGAA TGGCCTCAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_012281 						
					
						PMCS
						0.165428128

Conservation Information
Conserved circRNAs	osi_circ_012281
PMCS	0.165428128

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							31049968-31048097(+)
31049987-31048697(+)
31049959-31048069(-)
						
					

						Potential amino acid sequence
						
							MLETKKNGLSQNREEYHETS*(+)
MASARIEKNIMKPADICTTLRLPTRVKASNPAFSTDTEEPFPVPNSPSNKMPMPCQPIPRLSTE
GGRGVALAYLETAMKAPVDSTRATNEAAIIAKASPASKVGAPH*(+)
MLGTTVIIPTALVPQMGGNNEDKAVVIQTLLFVAGINTLLQSFFGTRLPAVIGGSYTFVVPTIS
IILAGRYANEPNPHTKFLRIMRGTQGALIVASALQIIFGFSGLWRNVARYLSPLSAAPLVMLVG
FGLYELGFPSVAKCVEIGLPELILLVIFAMYLPHAIHMMKSIFDRFAVLFTIPIVWLYAYLLTV
GGAYRNAPPKTQFHCRTDRSGIIGGAPWIRVPYPFQWGAPTFDAGEAFAMMAASFVALVESTGA
FIAVSRYASATPLPPSVLSRGIGWQGIGILLDGLFGTGNGSSVSVENAGLLALTRVGSRRVVQI
SAGFMIFFSILAEAILLGFQHYLVMLGTTVIIPTALVPQMGGNNEDKAVVIQTLLFVAGINTLL
QSFFGTRLPAVIGGSYTFVVPTISIILAGRYANEPNPHTKFLRIMRGTQGALIVASALQIIFGF
SGLWRNVARYLSPLSAAPLVMLVGFGLYELGFPSVAKCVEIGLPELILLVIFAMYLPHAIHMMK
SIFDRFAVLFTIPIVWLYAYLLTVGGAYRNAPPKTQFHCRTDRSGIIGGAPWIRVPYPFQWGAP
TFDAGEAFAMMAASFVALVESTGAFIAVSRYASATPLPPSVLSRGIGWQGIGILLDGLFGTGNG
SSVSVENAGLLALTRVGSRRVVQISAGFMIFFSILAEAILLGFQHYLVMLGTTVIIPTALVPQM
GGNNEDKAVVIQTLLFVAGINTLLQSFFGTRLPAVIGGSYTFVVPTISIILAGRYANEPNPHTK
FLRIMRGTQGALIVASALQIIFGFSGLWRNVARYLSPLSAAPLVMLVGFGLYELGFPSVAKCVE
IGLPELILLVIFAMYLPHAIHMMKSIFDRFAVLFTIPIVWLYAYLLTVGGAYRNAPPKTQFHCR
TDRSGIIGGAPWIRVPYPFQWGAPTFDAGEAFAMMAASFVALVESTGAFIAVSRYASATPLPPS
VLSRGIGWQGIGILLDGLFGTGNGSSVSVENAGLLALTRVGSRRVVQISAGFMIFFSILAEAIL
LGFQHYLVMLGTTVIIPTALVPQMGGNNEDKAVVIQTLLFVAGINTLLQSFFGTRLPAVIGGSY
TFVVPTISIILAGRYANEPNPHTKFLRIMRGTQGALIVASALQIIFGFSGLWRNVARYLSPLSA
APLVMLVGFGLYELGFPSVAKCVEIGLPELILLVIFAMYLPHAIHMMKSIFDRFAVLFTIPIVW
LYAYLLTVGGAYRNAPPKTQFHCRTDRSGIIGGAPWIRVPYPFQWGAPTFDAGEAFAMMAASFV
ALVESTGAFIAVSRYASATPLPPSVLSRGIGWQGIGILLDGLFGTGNGSSVSVENAGLLALTRV
GSRRVVQISAGFMIFFSIL(-)
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	31049968-31048097(+) 31049987-31048697(+) 31049959-31048069(-)
Potential amino acid sequence	MLETKKNGLSQNREEYHETS(+) MASARIEKNIMKPADICTTLRLPTRVKASNPAFSTDTEEPFPVPNSPSNKMPMPCQPIPRLSTE GGRGVALAYLETAMKAPVDSTRATNEAAIIAKASPASKVGAPH(+) MLGTTVIIPTALVPQMGGNNEDKAVVIQTLLFVAGINTLLQSFFGTRLPAVIGGSYTFVVPTIS IILAGRYANEPNPHTKFLRIMRGTQGALIVASALQIIFGFSGLWRNVARYLSPLSAAPLVMLVG FGLYELGFPSVAKCVEIGLPELILLVIFAMYLPHAIHMMKSIFDRFAVLFTIPIVWLYAYLLTV GGAYRNAPPKTQFHCRTDRSGIIGGAPWIRVPYPFQWGAPTFDAGEAFAMMAASFVALVESTGA FIAVSRYASATPLPPSVLSRGIGWQGIGILLDGLFGTGNGSSVSVENAGLLALTRVGSRRVVQI SAGFMIFFSILAEAILLGFQHYLVMLGTTVIIPTALVPQMGGNNEDKAVVIQTLLFVAGINTLL QSFFGTRLPAVIGGSYTFVVPTISIILAGRYANEPNPHTKFLRIMRGTQGALIVASALQIIFGF SGLWRNVARYLSPLSAAPLVMLVGFGLYELGFPSVAKCVEIGLPELILLVIFAMYLPHAIHMMK SIFDRFAVLFTIPIVWLYAYLLTVGGAYRNAPPKTQFHCRTDRSGIIGGAPWIRVPYPFQWGAP TFDAGEAFAMMAASFVALVESTGAFIAVSRYASATPLPPSVLSRGIGWQGIGILLDGLFGTGNG SSVSVENAGLLALTRVGSRRVVQISAGFMIFFSILAEAILLGFQHYLVMLGTTVIIPTALVPQM GGNNEDKAVVIQTLLFVAGINTLLQSFFGTRLPAVIGGSYTFVVPTISIILAGRYANEPNPHTK FLRIMRGTQGALIVASALQIIFGFSGLWRNVARYLSPLSAAPLVMLVGFGLYELGFPSVAKCVE IGLPELILLVIFAMYLPHAIHMMKSIFDRFAVLFTIPIVWLYAYLLTVGGAYRNAPPKTQFHCR TDRSGIIGGAPWIRVPYPFQWGAPTFDAGEAFAMMAASFVALVESTGAFIAVSRYASATPLPPS VLSRGIGWQGIGILLDGLFGTGNGSSVSVENAGLLALTRVGSRRVVQISAGFMIFFSILAEAIL LGFQHYLVMLGTTVIIPTALVPQMGGNNEDKAVVIQTLLFVAGINTLLQSFFGTRLPAVIGGSY TFVVPTISIILAGRYANEPNPHTKFLRIMRGTQGALIVASALQIIFGFSGLWRNVARYLSPLSA APLVMLVGFGLYELGFPSVAKCVEIGLPELILLVIFAMYLPHAIHMMKSIFDRFAVLFTIPIVW LYAYLLTVGGAYRNAPPKTQFHCRTDRSGIIGGAPWIRVPYPFQWGAPTFDAGEAFAMMAASFV ALVESTGAFIAVSRYASATPLPPSVLSRGIGWQGIGILLDGLFGTGNGSSVSVENAGLLALTRV GSRRVVQISAGFMIFFSIL(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os02g0741800_circ_g.1

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