Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d017303_circ_g.1 |
ID in PlantcircBase | zma_circ_008761 |
Alias | zma_circ_0001961 |
Organism | Zea mays |
Position | chr5: 192181904-192187354 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d017303 |
Parent gene annotation |
Regulator of nonsense transcripts UPF2 |
Parent gene strand | - |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d017303_T026:8 Zm00001d017303_T025:9 Zm00001d017303_T009:8 Zm00001d017303_T011:6 Zm00001d017303_T016:8 Zm00001d017303_T013:8 Zm00001d017303_T020:6 Zm00001d017303_T004:9 Zm00001d017303_T007:9 Zm00001d017303_T036:8 Zm00001d017303_T041:8 Zm00001d017303_T003:8 Zm00001d017303_T024:9 Zm00001d017303_T043:4 Zm00001d017303_T038:4 Zm00001d017303_T021:9 Zm00001d017303_T040:8 Zm00001d017303_T006:8 Zm00001d017303_T022:9 Zm00001d017303_T027:6 Zm00001d017303_T030:8 Zm00001d017303_T028:8 Zm00001d017303_T001:8 Zm00001d017303_T005:9 Zm00001d017303_T023:8 Zm00001d017303_T014:8 Zm00001d017303_T042:7 Zm00001d017303_T002:8 Zm00001d017303_T018:8 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.148480505 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
192182469-192187342(-) |
Potential amino acid sequence |
MKESTSEQETELHDDFQTSATEHQLEVKLDGGVKESDDKDKEKGKDGEKEKSKEKDLDKKNDRE KEKGRAMDGASLDNILQRLPGCVSRDLIDQLTVEFCYLNSKANRKKLARALFNVNRTSLELLPY YSRLVATLSTCMKDVPSMLLSMLEEEFNFLINKKMQTT*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |