Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os05g0105000_circ_g.8 |
ID in PlantcircBase | osa_circ_026177 |
Alias | NA |
Organism | Oryza sativa |
Position | chr5: 271866-272668 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os05g0105000 |
Parent gene annotation |
Similar to Methionine S-methyltransferase (EC 2.1.1.12) (AdoMet: Met S- methyltransferase) (Hv-MMT1). (Os05t0105000-01) |
Parent gene strand | - |
Alternative splicing | Os05g0105000_circ_ag.1 |
Support reads | 3 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os05t0105000-01:3 |
Conservation Information | |
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Conserved circRNAs | osi_circ_005899* |
PMCS | 0.225224979 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
272347-271868(-) |
Potential amino acid sequence |
MSKIVTENSSEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNMGGRPGQG VCERLFRRRGFRITKLWQTKIMQVYGLDINPRAVKIAWINLYLNALDDDGLPIYDGEGKTLLDR VEFYESDLLSYCRDNKIELDRIVGCIPQILNPNPEAMSKIVTENSSEEFLYSLSNYCALQGFVE DQFGLGLIARAVEEGISVIKPMGIMIFNMGGRPGQGVCERLFRRRGFRITKLWQTKIMQVYGLD INPRAVKIAWINLYLNALDDDGLPIYDGEGKTLLDRVEFYESDLLSYCRDNKIELDRIVGCIPQ ILNPNPEAMSKIVTENSSEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFN MGGRPGQGVCERLFRRRGFRITKLWQTKIMQVYGLDINPRAVKIAWINLYLNALDDDGLPIYDG EGKTLLDRVEFYESDLLSYCRDNKIELDRIVGCIPQILNPNPEAMSKIVTENSSEEFLYSLSNY CALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNMGGRPGQGVCERLFRRRGFRITKLWQTK IMQ(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |