Detail information of Os05g0105000_circ_g.8


General Information
CircRNA Name Os05g0105000_circ_g.8
ID in PlantcircBase osa_circ_026177
Alias NA
Organism Oryza sativa
Position chr5: 271866-272668  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os05g0105000
Parent gene annotation Similar to Methionine S-methyltransferase (EC 2.1.1.12) (AdoMet:
Met S- methyltransferase) (Hv-MMT1). (Os05t0105000-01)
Parent gene strand -
Alternative splicing Os05g0105000_circ_ag.1
Support reads 3
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os05t0105000-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCCCGTCGTAGATTGGGAGACCATCGTCATCTAGTGCATTCAAGTAAAGGTTTATCCATGCAAT
CTTGACAGCTCTTGGGTTTATATCCAGTCCATAGACctgcataatttttgtttgccacagtttt
gtgatccgaaatccacggcgtcgaaatagtcgttcgcagacaccttgtcctggtcgaccaccca
tgttaaat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGCATAATTTTTGTTTGCCACAGTTTTGTGATCCGAAATCCACGGCGTCGAAATAGTCGTTCG
CAGACACCTTGTCCTGGTCGACCACCCATGTTAAATATCATAATACCCATAGGCTTTATGACTG
ATATCCCTTCTTCAACAGCCCGAGCAATCAACCCAAGGCCAAATTGGTCCTCAACAAAACCCTG
GATGCAATAAGGTGTGCACTAAGATAACAAGCAGTGGATTACTGGGGTTAAAGAATATGAAGAT
CTATCAAGTGTAGAAGTTCACGCCTTGGTCCTATATTCCAATAGCTTGGAGATAATTCACCATT
GTTATTAGATAAATTGAATGGATTATATTTCATGCATATTTATTCATTTTCACTGAGGTGAATA
TACTGAAAATATTCTTCAGTTTACCTGAAGAGCACAGTAGTTACTCAATGAATACAAGAACTCC
TCACTGGAATTTTCAGTTACGATCTTTGACATTGCTTCTGGATTTGGGTTAAGAATCTGAAAAG
GGAGGATTTGGGGAGTAAGAGTTTTCCTTCCGTCTGGTTTACTATAATTTCCTTTCAAAAAAGA
ATATATTAGCATGACTGTACCTGTGGTATGCATCCAACAATGCGATCAAGTTCAATTTTATTGT
CTCTGCAGTAAGAGAGAAGATCAGATTCATAGAATTCTACTCTATCCAGCAATGTTTTCCCCTC
CCCGTCGTAGATTGGGAGACCATCGTCATCTAGTGCATTCAAGTAAAGGTTTATCCATGCAATC
TTGACAGCTCTTGGGTTTATATCCAGTCCATAGAC
Conservation Information
Conserved circRNAs osi_circ_005899*
PMCS 0.225224979
Functional Information
Coding potential Y
Potential coding position 272347-271868(-)
Potential amino acid sequence MSKIVTENSSEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNMGGRPGQG
VCERLFRRRGFRITKLWQTKIMQVYGLDINPRAVKIAWINLYLNALDDDGLPIYDGEGKTLLDR
VEFYESDLLSYCRDNKIELDRIVGCIPQILNPNPEAMSKIVTENSSEEFLYSLSNYCALQGFVE
DQFGLGLIARAVEEGISVIKPMGIMIFNMGGRPGQGVCERLFRRRGFRITKLWQTKIMQVYGLD
INPRAVKIAWINLYLNALDDDGLPIYDGEGKTLLDRVEFYESDLLSYCRDNKIELDRIVGCIPQ
ILNPNPEAMSKIVTENSSEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFN
MGGRPGQGVCERLFRRRGFRITKLWQTKIMQVYGLDINPRAVKIAWINLYLNALDDDGLPIYDG
EGKTLLDRVEFYESDLLSYCRDNKIELDRIVGCIPQILNPNPEAMSKIVTENSSEEFLYSLSNY
CALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNMGGRPGQGVCERLFRRRGFRITKLWQTK
IMQ(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017