Detail information of Os06g0508700_circ_igg.1


General Information
CircRNA Name Os06g0508700_circ_igg.1
ID in PlantcircBase osa_circ_031012
Alias Os_ciR10397
Organism Oryza sativa
Position chr6: 18146046-18146288  JBrowse»
Reference genome IRGSP-1.0.38
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os06g0508700_circ_g.1
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAATGTACTGCTGAAGATTTCTGATTTCTTACCTTTGTATGGTCCTCATTTGATGCAGCCAGAA
CCATTGCATGTGATTTTATACCGCGCATCGCCACTGacgcctcaggctctccagagtacccagc
aaaggtcaccctctccccaaccgctgcggattctggtggctcaaccagctcaacctgaatttca
aatgtcag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ACGCCTCAGGCTCTCCAGAGTACCCAGCAAAGGTCACCCTCTCCCCAACCGCTGCGGATTCTGG
TGGCTCAACCAGCTCAACCTGAATTTCAAATGTCAGCTTATCCATAAACAGAGCTGAATGCTAC
TGGTCGCACACAGTGTAATGTACTGCTGAAGATTTCTGATTTCTTACCTTTGTATGGTCCTCAT
TTGATGCAGCCAGAACCATTGCATGTGATTTTATACCGCGCATCGCCACTG
Conservation Information
Conserved circRNAs NA
PMCS 0.283685837
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015