Detail information of BGIOSGA016932_circ_ig.2


General Information
CircRNA Name BGIOSGA016932_circ_ig.2
ID in PlantcircBase osi_circ_014660
Alias Chr07:1471082_1474203(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 27181849-27184970  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA016932_circ_ig.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-TA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGTGCGAGGACGCTGGGAGGAGTGAGCGAGGAAGAGAAGCGCGCGGTCTCCGCTGCTGCGGGTG
GAGGAGGAGCGATGTCTTCGCACGTGGAATCCTCGGcctgtctaaatcaggtagagagatcatg
caccgattgttgttccctcctttggttagataggaaacggatattagaaaatagaaatccatga
taaaaaat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGTCTAAATCAGGTAGAGAGATCATGCACCGATTGTTGTTCCCTCCTTTGGTTAGATAGGAA
ACGGATATTAGAAAATAGAAATCCATGATAAAAAATACCAGTGATAACTTTGTTTCACATCAAC
ACTGATAGCACAATCTAACATAATAATAATTCCCTTTTATCTCCGTGTGATATATCCAAAGAAG
AAAAGGCAGAGGATGTTGCATTGTGAATATTCATATATTATATATATTTCTAAAAAATCATGAT
GAAACTAAAACTATAACAAGAGGTCAATTCATCATGTATGTTCCCATGTCTAAAGCAATAGATT
ACCGCATTTTAAATCAGCATAACTAATATCATAATGCTCCATTAAAATTGTAATAATACTTCAT
TTAGCGGAGCTACAACATATCAGTCATAGAAAAGCAAGAAGCAAACCTTGTCTAGAAGTAATCC
AGTAAGCAAACAAATGTTGTGCCTCTCTACTGACACCTGAATATTTCGATCACTGTAGGCTGAA
ACATTGTCTATTGACTTAATAAAAATGTATACACTTCAAATATATCTACTTAGTCACACCAATC
TTACTAATTCCACTATGCACCAATATAACAATTGAGGTTTAGCAAGAAAAGACCAACATATTGT
CTAATAATAATATGTACTATCTTAAGGTTTCATATGATTAGGTCAGTTTTTTATGTAGCCTAGA
GCATTTCAAATGGAGAGGTCCCTCCTCTGTTTCCCTGATTGCAGCAAGAATTTCGTCATGGACC
TTCAGAACAGCATATATATTGTAACATAACATTTGCACAATAGAAGTGCAAAGTATACATAACT
GCAGAACTGCCGAATGCTACGATTAATGGTATGAAATACCCAAAAAAAAAAATGGGCCCACTGT
TTTCTCTGAATATTTGCTTGATACTATTCTCTGAAGATATTTTTTCTTAGGATCTGGATACCTA
GTTAGATATTCACATCTCAGAAATGCAGAAGCTAATCATCTCTCTTCTTATCCTCTACATGTAT
TAATTACATAAAGATGATTAAAGAAAAACACATCATAAGGATTATGCAAATTTCAGTACATAAA
AAGATAGCAATTGATTAAAGAAAGTATCGCTATAACTCAAGATATGTCATTAGCCTACAGATTG
ATGTATCAGATGCATGGTAGCCGTCCATTTAGCTACTAATGAACGGTCAAATGTGAAGGTTACG
GTACCGGATTCATCCATAAGTCTTCAACCCCTACCCCTAGCCTTAATTAATGTCTGCACAACAA
ACTAAACTAACCAAAATAATAAATACCTGTTTATTTGCGTGATGCAAGTCGTTGGTGTCTTTCA
CAACCTGTTGGTCGTCATTTCTTTCTCCTCGTTTCCCTTGCCACAAGGAGTGCCAAACTGGGGA
GCAGACCTGATGACAGTGTTGAGACAGAGGTGCCGCATTAGTTTACAGGAATCAAATGTTACTT
CTAGAAGATCAATGATTTGTATCCAGTGCTCAAACTTAACTGCCAAAAATGCAAATGCTACAAC
ACTCTCCTTTGAGCATACCTCCCAGTGGGATCGCGCTCCTCTGACGTAAAAGTCAGAGGGACGT
GGGACTCATCCCTCCCAGTGCACGCCCAGTGCCATTGTTGAGCTGCCGTCATCGCAACCGCCAC
AGCATCCATCGGCTCTATTCAACTTTATACTCCCTGGGCCATGATGGCTGCAGAATTAAACAAA
ATTAAGCAAAATAGAAATCAACACACCTGCCGAGAATTCCTAATAAAACAACCAATCAATTAAT
ATCATCCAACAACAAACAAGATCACCTCACAATAACAAGCTATCCAATATTTTTTTTCCTATTA
TAGGCTGTAAAACAACTATGTAAACTATGTAAACCTGTTTGTTCAGATGAGGAGTATGGCCCAA
TGAAAACCGAACTTGCTGCCCACTCCTATCTTGAGACCTATTTAGCATATGGATGGCTTCTCCA
CCTGATGACCTAAAAATACAGTAATAAAACCAAGGCAACGAAGAATTATACCAGATATGTTTTA
GGTAAAGATGATTAGCAAATAAATCCTTAAGGAATTTTTAACCTGCTAGTAAAGAAGGACATGA
AGCATAGGCGTGTGATGATGCCCATTGAACCGTGCGAGACGGCGGGTCGATGATGGCAGCAGCC
CCGTTGGTGGAAGTGGCCGGATTCATGGCGCCAAAGATGACCAGATCTTCTTAGCCTCGGCGGC
TATGGTGCCGGGCGTCGACAGTTGGGGGAAGAGCGAGCACGGCGTAGGTGGCAATGTGGGCAAG
CACCATGGGAAGACCCTCGTGGTAGCCATTGACGGAAGAGAGATCTGCAAGCATGTTCCCTGTC
GACATCTCAGGCGCCACCGCCGATCCTCTCCCGCCACATGCTATCAAGGTCACTTTTGCGTGGA
TCGAACGCACTGCCGTCGCCGGTGTCCATCTCTACCTCCCGTATACACCGTCAGCTCAGCTTGT
CCGCCTGATTTGGCTCGACAGTGGCAGCTTGATCCTCACTCGCGGGCGCTGTTGATGGGGGCTC
GGCTGCAACTCTCCACCGAAGGCAGCCCCTGCCCCTCCACCATGAGCCCGAGAAGGCATGGAGG
GATTGGCGATGGCGAGGCCGCGAGGGCAGCGGCTACGGAGGGGATGGAGTCACGGGCGAAGAGA
GAGAGAGAGGGGCGAGCGGCGAAGGTGGAGGACGGAGATTCGTACAGGTCCGAGTGGGAGAAGA
ACGATACGGCGGCGGCTCCGGCGAGGACGTGGCGTAGCGCCGGCAGCGGGGCGGAGGAGAAGCC
CGTGAGGAGGACAGCCGCGGCGGTGGGGAAGAAGAAGGACGGCCGCGGGCTGAGGTCGATGTCG
GTTCCGGCGGCGGAGAAGGGGCCGAAGTCGGCTCCGGCGGCTGATCCGAGTGGGAGAAGCATGA
TCTGGGAAGAAGGAGGACGGCCGCGGTGGCTCCGGCTAGGGCGCGGCGTAGCGGCGGCAGCGGG
GAGTCGCTCCTGCGAGTGCGAGGACGCTGGGAGGAGTGAGCGAGGAAGAGAAGCGCGCGGTCTC
CGCTGCTGCGGGTGGAGGAGGAGCGATGTCTTCGCACGTGGAATCCTCGG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021