Detail information of BGIOSGA016230_circ_g.2


General Information
CircRNA Name BGIOSGA016230_circ_g.2
ID in PlantcircBase osi_circ_005406
Alias 4:15989287|15990907
Organism Oryza sativa ssp. indica
Position chr4: 15989287-15990907  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA016230
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA016230_circ_g.1
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA016230-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTGCTTGTCAAAGATTCCACCAGTGACAAGGCAGATGAAAACAACAAAAAATCACCTTCAGCAT
CCAAAAAAAGGAGGAACCAGAAAAAAGGTCCCTCAGgttcatgatggctggtgatggtgtgaag
caacgagagattctgcaagaggtaattattaaaatatattttccgtggaatgcctgttctagtg
gcaatttt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTCATGATGGCTGGTGATGGTGTGAAGCAACGAGAGATTCTGCAAGAGGTAATTATTAAAATA
TATTTTCCGTGGAATGCCTGTTCTAGTGGCAATTTTGTTTGCCCTTGCCCTAAGGACTAATGTT
ATCCAGATTGACCATCATCTATATAATATTGGAGTCTTTTGCAGACTTGGTGCCATTCTTTTGC
ATAAGCATAATTACAGGCTTACTGCCAAATTATAGTGGTTGAAACCTCTTCAAGTCATTTAGCG
CGTATTTTGTCCATGATCTATCATGAACGATAGATGCAATGGAACTGTGTCCACTTGATAAAAT
TTTTCCAAGTATAGGAGTCCCTCTGATAACTCACTTCAGCAAAACCGTTTGATGCTGGGCAGAA
GAACAGTGAATTTGATGTTTGGACATCATTAGTTGATGGACTAAGTTTAGGTTTTTGTTTAAAG
ATGATAATTAGGTAGCCTAGTCTTCCATAATCTGGCTCCTACAAAGGACCTATCTTATGCTCTT
AATCTACTGATTTTCATCTATCATTATTTACCAGTATGTTATCTCTATCAGTTTTGAATGATCC
CAAGAATGAGAAACTATATATTATTCATTTGGGTATCCTAATGGGTGGTATCTGTTCATAGAAA
GACAAGGTTTAGACTGAAAATAACACAATTTCTTTTTTCAAAGGAAAGAAGGATTGAAAATAAT
TTCTATACATCAACTTTGTACTGCATGCATACTAAGTTCTAAGAGTCAGTCCATTCTATGCCAT
CAACAAAGCGCTGGTTATGCCATTGGCAAAACTCAGTTCCACAATATACCATCGAACAACTCAT
TTTCTTCCTTATATGTCATCGCCGTTAGTCAAATGCTGTTAAGAGAGGAAAAGTGAACATTTTA
CCCCTAGGATAAATTTGAGATTTTGCACAATGCCATGTAGCATTAAATAATCTTGGATGATAAA
AAGAAAAGCGGTTTCTATTTTTTCATCAATGAGAGGAAATAGTGGATCATGACCAATGAAATCC
ATGAGGACGCATGATACCCTAGAGGCAAAATGAACATTTTCTTGCCCTTAATGGAATTTGACTA
ACTATTAACTAGCAACGATAGAATGTAAGGAAGAAACTAGTTGTTTGATGGTATATTATAGAAC
CGAGCTTTGTCAGTGCTATATTGTAGAACCCATGGTTAATAGCATAGAATGGATTATCTCAAGT
TCTAATTAGATAGTATAGATGCACTTGTGGACTGATATGTTTCTTTATTTTAAATTTTCGAACC
ACCTGATTCACTTGCTAGTTGCAATTGCAATTTCTTATCACTGTTGACTTGTATGCATGCCCTA
CCTTCTCTAATGGACTGTTTGCGTTGAATTTTGAAGGTAACTTCAGAAATAACTGGTCCTATGG
TTGTGGAAGATGTTGTTTATGAAAATAGTGATGAAGACCAAAGTTCTATGACTGAAAAGATGTT
CCGGCGCCTTATATTTAAAAGAAATTCTGGCTTAGTGCAATCTGAAGCATTGCTTGTCAAAGAT
TCCACCAGTGACAAGGCAGATGAAAACAACAAAAAATCACCTTCAGCATCCAAAAAAAGGAGGA
ACCAGAAAAAAGGTCCCTCAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 15989294-15990817(-)
15989292-15989291(+)
15990843-15989301(+)
Potential amino acid sequence MNLRDLFSGSSFFWMLKVIFCCFHLPCHWWNL*(-)
MMAGDGVKQREILQEVTSEITGPMVVEDVVYENSDEDQSSMTEKMFRRLIFKRNSGLVQSEALL
VKDSTSDKADENNKKSPSASKKRRNQKKGPSGS*(+)
MKTTKNHLQHPKKGGTRKKVPQVHDGW*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021