Detail information of Zm00001d008789_circ_g.1


General Information
CircRNA Name Zm00001d008789_circ_g.1
ID in PlantcircBase zma_circ_005633
Alias tassel_test_circ_001127
Organism Zea mays
Position chr8: 20248959-20249252  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method find_circ
Parent gene Zm00001d008789
Parent gene annotation protein_coding
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues tassel
Exon boundary   No-No
Splicing signals   GT-CA
Number of exons covered Zm00001d008789_T028:2
Zm00001d008789_T001:2
Zm00001d008789_T022:2
Zm00001d008789_T018:2
Zm00001d008789_T020:2
Zm00001d008789_T015:2
Zm00001d008789_T009:2
Zm00001d008789_T004:2
Zm00001d008789_T031:2
Zm00001d008789_T024:2
Zm00001d008789_T033:1
Zm00001d008789_T006:2
Zm00001d008789_T030:2
Zm00001d008789_T035:2
Zm00001d008789_T014:2
Zm00001d008789_T005:2
Zm00001d008789_T002:2
Zm00001d008789_T003:2
Zm00001d008789_T016:2
Zm00001d008789_T008:2
Zm00001d008789_T012:2
Zm00001d008789_T026:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTGTCCTTAAGCTATTACTATTGAGAACTCCACCAGTGATCCTTTTGCGCATTAGAGCATCCTT
AATCCTGGACTGACTTAGTTGAGTATCAGCGAGCATgtattgagattaccaaaccaacaagatc
ctgcagttaagttcaacagaaccaagatcagcattcagcacaaaatgaactgattcataatcac
tctgtgga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTATTGAGATTACCAAACCAACAAGATCCTGCAGTTAAGTTCAACAGAACCAAGATCAGCATTC
AGCACAAAATGAACTGATTCATAATCACTCTGTGGACAGTAACAGTGGCAGAGAAAGACCTGAT
GCCCAACTGGTTTCGAATTGTGCAAGATATGAGAAAATGGGTAAAACAAATCTCTCCTGTCTTT
TAGTGTCCTTAAGCTATTACTATTGAGAACTCCACCAGTGATCCTTTTGCGCATTAGAGCATCC
TTAATCCTGGACTGACTTAGTTGAGTATCAGCGAGCAT
Conservation Information
Conserved circRNAs NA
PMCS 0.320290334
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Tang et al., 2018