Detail information of AT2G02790_circ_g.1


General Information
CircRNA Name AT2G02790_circ_g.1
ID in PlantcircBase ath_circ_012609
Alias 2:789241-789429
Organism Arabidpsis thaliana
Position chr2: 789241-789429  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G02790
Parent gene annotation IQ-domain 29
Parent gene strand +
Alternative splicing NA
Support reads 1/1
Tissues seedling;leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G02790.2:1
AT2G02790.3:1
AT2G02790.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTGCATTTGGGGAATTGTGAAAGTACAAGCACTTGTTCGCGGGAAGAAAGCTAGATCTTCAGAA
ACCGTGGCTCAACTTCAGAAAACAAATACGgcccgtgaagaatctcagaacctcaaaggtatca
caagggtgcaagcagttatccgtggtcacttggtcagaagacaagctgttgctacttactc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 189
Transcript exons: 789241-789429
GCCCGTGAAGAATCTCAGAACCTCAAAGGTATCACAAGGGTGCAAGCAGTTATCCGTGGTCACT
TGGTCAGAAGACAAGCTGTTGCTACTTACTCGTGCATTTGGGGAATTGTGAAAGTACAAGCACT
TGTTCGCGGGAAGAAAGCTAGATCTTCAGAAACCGTGGCTCAACTTCAGAAAACAAATACG

Genomic sequence GCCCGTGAAGAATCTCAGAACCTCAAAGGTATCACAAGGGTGCAAGCAGTTATCCGTGGTCACT
TGGTCAGAAGACAAGCTGTTGCTACTTACTCGTGCATTTGGGGAATTGTGAAAGTACAAGCACT
TGTTCGCGGGAAGAAAGCTAGATCTTCAGAAACCGTGGCTCAACTTCAGAAAACAAATACG
Conservation Information
Conserved circRNAs NA
PMCS 0.332452341
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020