Detail information of BGIOSGA015373_circ_g.3


General Information
CircRNA Name BGIOSGA015373_circ_g.3
ID in PlantcircBase osi_circ_014216
Alias Chr04:13395849_13396792(MH63RS2), Chr04:13395844_13396792(MH63RS2), Chr04:13395849_13396792(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 11708883-11709415  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRI2, CIRI2
Parent gene BGIOSGA015373
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-NN
Number of exons covered BGIOSGA015373-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGTGTAGTTGATTAGCTGGACCGTGATCTCCTTCTGCTCCCTGATGGCCTCCCTGATCTTGTCC
ACCGTGCCCTGGTCGGTCTCCGGCCCTTGAAGGAATaatacagtaagctggcctaccaatttgg
cactctgtatctcagtattctctgaaaggcggttcctgaggggttcaacatgatcacttccatc
aagttgca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AATACAGTAAGCTGGCCTACCAATTTGGCACTCTGTATCTCAGTATTCTCTGAAAGGCGGTTCC
TGAGGGGTTCAACATGATCACTTCCATCAAGTTGCACACCAATGAAGTATTGAAGCTCCCCCTG
CACTCACAGATGTGCAATCACTACCATGTAGTAATCATACCCACTACTAGTTAAAAATTGGAAG
CTCCAAAATACTTGGGAGTAGCATTTGGCACAGATTTTTCAGATACCTTCTGGTCGCGCATGGG
TTGAAGGTGGAACAAGTTCCAGAACTTCTTCCCTGATCACACAACAATCCAAAATCAGACAAAA
TCATCAGAGCTTCTACATCATCCAACAGTACTACTGTATATCATCTAAAATCTCAATATCTATC
CAGTTCAAGAGAGGGATTCGTGTCCAGAGTTTGGAGCATTACCGCTCTTGGTGTAGTTGATTAG
CTGGACCGTGATCTCCTTCTGCTCCCTGATGGCCTCCCTGATCTTGTCCACCGTGCCCTGGTCG
GTCTCCGGCCCTTGAAGGAAT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021