Detail information of BGIOSGA011388_circ_g.4


General Information
CircRNA Name BGIOSGA011388_circ_g.4
ID in PlantcircBase osi_circ_013894
Alias Chr03:3565086_3566005(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr3: 4006381-4007300  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method find_circ
Parent gene BGIOSGA011388
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA011388_circ_g.1 BGIOSGA011388_circ_g.2 BGIOSGA011388_circ_g.3
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-AA
Number of exons covered BGIOSGA011388-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTACTCCAAAGTTTCCTCCAACTTTCTTTCCTCTGCTTCAAGTCGTAATCGATTCCTGAATTCT
TCTTGATCATTTAAGTAATTATCACTTGTTGAAAGTcctttctcactacttgaattctctcttc
cagcggagtgagcaccatgcacacggtgtgaataagacaatagtggtagctgattttgttttgt
gtcttgat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTTCTCACTACTTGAATTCTCTCTTCCAGCGGAGTGAGCACCATGCACACGGTGTGAATAAG
ACAATAGTGGTAGCTGATTTTGTTTTGTGTCTTGATAACTGTGATTGGCTGCTTTACCAGAACT
GCTCCATCTTGAAACTGGTGAACCAGATTGTCGAATAGATGGCCTAGTATCATCATCACCATCG
TCAACAGGAAAAGTGCCTGTCACACCTTAAAAAACATACAGGTAAAGAATTGTTTGCATTGAAG
TTGCAAAAACGATTAAAATAAAATATCTGATTTGGACAAGACAAACCAACAACCTTGAATGTAC
TTTTTATGAGCTTGGCTGGTACTTCTCCTAGACTTTTGGGTGCTAGGAATAGTTGGAACCTTTG
TATTTTCTGCATTTTTCCCAACTCCATTCGCTTTCAGTGTAGCCTTTGTATATTCTACATTTTT
CCAAACTCCATTCACTTTTACTGTAGGCTTAATAAGGTCCACATCGCTGCTGGCTATTGGGCGT
GTACCAGGATAGCCCAGACCATTATGTACCTCGTTATGATTTTTCTCCTTTGTTTGCAGAAGAT
CAGAATCACATGATCTCAAAATAGAATGTTCTTCCTGCAAAGGAACTTCAGAAAACCGAAAATC
ACCAAAATTTATGCCCTCAAGATGAGTGTGTGAGTTATTTTGAGCACAATGGTGCTTATCCTGA
TCCCCGTTCAAATTCACATCAGTCCGAAGACAAGCTGACCCATCGGAACCTGGTGAAGTCCTTC
TGTGTTGTTCTGCAAGATGCTTCTTCTTTGCTTCCTCCTCTATCCATCTTTGGTACTCCAAAGT
TTCCTCCAACTTTCTTTCCTCTGCTTCAAGTCGTAATCGATTCCTGAATTCTTCTTGATCATTT
AAGTAATTATCACTTGTTGAAAGT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021