Detail information of Solyc10g018300.1_circ_g.3


General Information
CircRNA Name Solyc10g018300.1_circ_g.3
ID in PlantcircBase sly_circ_003072
Alias SL3.0ch10:7331272|7332405
Organism Solanum lycopersicum
Position chr10: 7365355-7366488  JBrowse»
Reference genome SL2.50.38
Type   ei-circRNA
Identification method CIRI; find_circ
Parent gene Solyc10g018300.1
Parent gene annotation protein_coding
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues leaf
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered Solyc10g018300.1.1:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TACACTAACCAGTAGTGACTTCAACACCAGGTGTCTCAAAATTCTCAGGGTGACCCGGAATTTT
GCTTCCCCATTGACGGAAACTTTTCAAATCGTCTTCcctcttcacatcttcaggcacatggaaa
ggctcataaggccatcccaggttatttctagttgcctcgacttcctttgctccaagtgcactac
cgtgcaca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTCTTCACATCTTCAGGCACATGGAAAGGCTCATAAGGCCATCCCAGGTTATTTCTAGTTGCC
TCGACTTCCTTTGCTCCAAGTGCACTACCGTGCACACTGTAAGAGTTTGCCTTGTTAGGAGAGC
CAAAACCAATCGTTGTAGTTACCTGTCGGGAGAAAAGAACAGTCAAAGCAATGTTTGTTAGGTT
CTTTTAAAATCTCTTCTTTCAGTTCACAACATAAACTTCAAGTGTATATTGGACCTTGATCATA
GTAGGTTTGTCTTTGACAGATTTAGCTTCCTTAATAGCTGCACGAATCTCATCATAACCCGTGT
TACCATTCTTCACCCAGATCACGTGCCATCCTAGAGCCTCGAAACGAGCAGAAACATCCTCAGT
GAAAGCAATTTCTGTGTCTCCGTCAATGGAAATGTGATTATCGTCATAGAAAGCAATCAGCTTT
CCAAGTCCCCAATGGCCAGCAAGGGAACAAGCTTCATTTGAGATACCCTCCATCTGACAACCAT
CCCCAAGTATAACATATCTGAACAGCCAACAACAATTGCCATCAGTCAAACTAGAGTATACAAA
ACGAAAACGATCTTAGGAGCAAGCACTACATCAAAATGATTTATGGAAGCAATTGATTAACAGC
AATAGCTTATTGCCACTAAATATGTATGTTTAACAACAATTAGCACTCTTCGTAAATGTTCCTA
AAGCCTATAGCAAGATTGGATCCAAAGATATTTAACTAATGTCAGTAAAGACTTTTAGCACGCT
TTATTGTAGCTAAAAGTTGTTTTTGTCGTAGTGAAGGAAACACTCTTACGTATAGTGGTCAACA
ATCTCAGCATCAGGCTTGTTGAATCGAGCAGCCAAGTGCTTCTCGGCAACAGCCAATCCAACAG
CATTGGCAATACCTTGCCCCAGAGGACCTAAGAACAAACAAAACAAGATAATAATCAATCATAT
CGACTCACAAATCAAACATATGGAACCTAATGTATAGCACGACGATACATATATTCAAACCAAT
CGTATCAAAATACACTAACCAGTAGTGACTTCAACACCAGGTGTCTCAAAATTCTCAGGGTGAC
CCGGAATTTTGCTTCCCCATTGACGGAAACTTTTCAAATCGTCTTC
Conservation Information
Conserved circRNAs osa_circ_023224
PMCS 0.343310553
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description responsive to low-temperature stress
Other Information
References Yang et al., 2020