Detail information of BGIOSGA014796_circ_g.1


General Information
CircRNA Name BGIOSGA014796_circ_g.1
ID in PlantcircBase osi_circ_014519
Alias Chr04:25433336_25435439(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 23449060-23451163  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA014796
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA014796_circ_g.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA014796-TA:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATACAGCATTTGCTTCCTCTTCTTCTGAAAATTCGACTAAAGCAGTGCCACAGAAGTGTCGTTT
GTCGGCAATATGTCGAGGTAGCCTCACACTGTTCACccttcccctgttacttctattgtctcta
tattttccttgaccgccctttatcgcactccaataatccttctcagcttgacctgaatgaaagg
aacagtaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTCCCCTGTTACTTCTATTGTCTCTATATTTTCCTTGACCGCCCTTTATCGCACTCCAATAA
TCCTTCTCAGCTTGACCTGAATGAAAGGAACAGTAAATCATCAAAATAGTGATAAAACATAGCA
TTCAAATCCGCTGAAGTGTTATGCTTTTTCTATACCAATTTGATGGATCATTAGCGATTTTTTG
AAGTCAAGCATCAATACATCAAGACAGCTTCTGCTTAAAACTCATGGTTAAACAGTACACCTAA
ATACACCTAAAGCAGGAATGCCAACCATATGACATATCAATAAGGCATCAATTTTGTGGTCGAT
TTAGTTACTCAGTTCAACAAAAGCTAAAAAATAATAATTAACTGAAAGAAAGTGCAGTTCTTAC
CAGACACAGGTTCCAAAGTAACAAGATGGCCCTTCATAATCAAACCACCTTCATCTGAAATAGC
CGCAAGTGCACGGGCCTTTTCAGCTGCCTTAGAATCCTCGAACCGAATGTATCCTGAATCCTCC
CCTATGCTGAAGTCCACATACTTCAAGGGGGGAAAATGGAACAATAAAAAAGAAAGAGTTTTGA
ATCAGCATAAGTTGTCTGATAAAAGAGATTATGTTTACTTGTAGAAATTAGAAAGCAAGATACA
GAATTGCATAAAAGCATGGTGTAGATGTCTTTACAAGATGAAGCATTATTTCTCTTGCTTTCTC
TCCAGACAAATGTGTGCTTACAAAAGGCAGTAAGAGTAAGAACACGAACTATTGGATCATCTCA
CTGTAGCTCTACACGTTTGACTAGATTAGGTTTGTCCAATTAGCACAAAGGTAATATGATCGAC
ATTGAACTAAGTGTTGCTATCATTTACCAAATCCTACAAAAATAGCATGAATAAATATAACATA
ACAGCATGCTATTGTGATCACATAACTGTATGACTCCGTCATTGAAGCCAACAAGCACTTCTCA
TTAAAAAAAAACTAACAAGCTAAGCTCAGTTGTATGCATCATAACAGTCTCACAATCTACAGCA
AACAATAGTCGGCCAAATGAAATATGCAACCTATCTATTCTGGATATTTTATGCAATGCACACC
AGATTTACAACCTCAGGTTACTCCTGGTGAAACAAAATCAATATGAAAAACAAACATCATCAAT
TATTGGAAAAGTTACCCGCACTGTGCCGAATTTGCCAAATTCTTCTTTAAAATCTTCCCTTGAA
ATTGGATCATCCGCATTTTCTGAAGGACTTTCTCCTTTCTTAACAGATTGAGCAGCTGCCTCTT
TTGACTTCTCAACATCATCTGACAAGTCTTCCTTGATATCACTGTTCTCAGGGATTTTCTCGTC
ATGCCCTGTTCTTGATTTATTGGCATCATCAGTTTCACCCTCTTTGTCCCCACCATTTTCTGCC
ATGCCACCATCAATTTGAATTATCTTCAGCTTGAAGGCCACAATTAGACCTTTTGGATATCTAT
AACCAATTTTTATGACTCGGTTATCTTCAACTCAAGGAAATTGAAAAAACCATTTGTAAAGTTG
TTAGTAAAGAAATGTTTACCCCTCATCATGACCATTCTTAGTAGGTTGTGACTTCTCATAAGCT
TCTTTCTTAGCCTCTCTTTCAGTATCGAATTCTTTCCTTCATTTTTTTCAGGATTGCATGACGG
TTATCAGAATGATATTCAGTTAATAAATAGATTCAACTATGTGAAATGAGGAACTGGTTCAGTT
AACATTTATCAAATATGATGAAGAAACAACAGGACATATTGCAGCTAAGCAAGTTGCAATCAAC
AACTGCAATTACTATAGAAGCATAACATAAAAAATAACTAAATAAGAAATGAAAAATTGCCGTT
TCAAAAAAGAAATGAAGAATTTGCCCAAAGCATGGAGACATAAATCTCTAGCTAATCAGTATAG
TACGAGGAAAGAAGCTTGAGCAGTAGTTGGCTTACTTTGGTTTTATTTCCAGATCTGCTCCTGC
AAAAACAAGAGTATTCTTTAATACAGCATTTGCTTCCTCTTCTTCTGAAAATTCGACTAAAGCA
GTGCCACAGAAGTGTCGTTTGTCGGCAATATGTCGAGGTAGCCTCACACTGTTCAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021