Detail information of BGIOSGA000344_circ_ag.1


General Information
CircRNA Name BGIOSGA000344_circ_ag.1
ID in PlantcircBase osi_circ_011048
Alias Chr01:40138765_40143378(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr1: 42491955-42496568  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ag-circRNA
Identification method CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA000345_circ_ag.1 BGIOSGA000345_circ_ag.2 BGIOSGA000345_circ_ag.3 BGIOSGA000345_circ_ag.4 BGIOSGA000345_circ_ag.5 BGIOSGA000345_circ_ag.6 BGIOSGA000345_circ_ag.7 BGIOSGA000345_circ_ag.8 BGIOSGA000345_circ_ag.9 BGIOSGA000345_circ_ag.10 BGIOSGA000344_circ_ag.2 BGIOSGA000344_circ_ag.3 BGIOSGA000344_circ_ag.4
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-TA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATACTTGGATTTGTGTGGAACTACAATTTCGAATGTCAGTTTTGCAACTGGACCATGACTGTCC
AGGAAAGGATCCATCTGGCGCAAGGGCATTTTGTATcctgccaagaatcataggcagagttcac
aataagcgtgggagcggtgatgctcttgacaagctcagtggccaagaagcactgggaacagtga
catgtcag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGCCAAGAATCATAGGCAGAGTTCACAATAAGCGTGGGAGCGGTGATGCTCTTGACAAGCTC
AGTGGCCAAGAAGCACTGGGAACAGTGACATGTCAGTAAATGAACTCAGTAACATACGGAGACA
CGGAGTACAACATAACAAAAAGAGATCTTTTATGGACTGCAGAGAAATACCTCTGTTCGATCCT
TCTTTGCAAGACAATCCTTTGGCAAAACTTCACTAACATTCTGGGATAAAATTCCAAGCAATTA
CTGAGTAAAAGCATTATAAGAAAAAATTTATAAGTTTCACTTTGTCTAAGGCTTACCTGAAGCT
GAACAGTTCCATTGAAAACGGACCACATGAGCCTCTTCCCAGATAAATCCTCACTGGAGCATAA
ACTGCCATTTCAGTACAGGTATACCACTCAAGTAGGTTATACTGGTGATTAACATCCAGAGGCT
TACATATCAAGGAAAATTCCAGCATCAGGAAGGCATTTAGCTGAAACCTCCTTAGGAAATCGTG
CATGAAAATCATTGCAGTGCAGTAGTGTAGCTAGACCACCAGCGGAGCATCCAGAAAGTAAGGC
CTGAAACGTGTAGAAAAATGAATTTGACACAGAAGATAATGGGAATATTTCAAAAAGAAAAAAA
ACACAACAACAACGTGCAACCTGTTTAGCACTCGCAAGTCCTTTTTCCATGAGCTCATCAAGAA
CTGCTTGCCAGATGCGCAATCCTCTGAAGTGGAGCGTGCTCCCATCCTACACCATCGCCAATAA
TGTTGGATACTTGGTTTTATTTTTGGAAATATTTGGAATCTAAAAAAAAATTCAGACAAAGAAA
TGGTCACCTGATCTTGAGCCTCCGCATTCCCTGAAAACGATGCTCCATCGCAATACCTTATGAC
AACTTTGTTCCAGTTGTAAAAATCTAATACACAATTATTGAAAATTAGTAAAAGTATGAAGTAT
TCAATCCTAAAAAAAGGACATATATCAAAAGCCTTCTAAATGTTAATAAGAAAAAATATATGTT
TACCACTGAACGCCCCATTTATTTTAGATTAGGTTTATTGGTTTAGATTTCTAAGCTGACTTTT
TTTCTTTTATGGTAAAGTCTATATGTGTAGGCTTTAGTTTTTTGGCTTATAAATTGGCTCATAA
GTAAACAAATACAAGCCAAAGGTTCCTTGCAAAAAGAAAAAAAGAAAGAAAAGAAAGAAAAGGC
AATGGCTTATCAGGACATAAGGAACCATCTGTTATCTGCATGTACCAGAATTCACTGTTTGGTT
ATTGCTGAGTATCCCCTCGAACTCTTGCGCTTCCATCAATTTGGATGAACCAAGCTCGGTCGTT
TTACGGTTGGAACAGCTTTCGATGGTGTCGCACCAGGCTCCTCCCTGAGCATCATTTTTCACAT
TTTTCAGTACAAAAATCAGCACAAACAGAATCATGCATCCGGCCATGCACGCAGAAAAACAAGT
CACGGCAACCATGAACTGAAAGCTATCTGCGACAAGAGAAAATCGATGGATGCACGATCGATCA
CCTCAAGATAGATGAGCCAGCTGTGTTCACCGGAGCCAAAGCCTCTCTGCAGGTGATAGCCCGG
TGGGCTCCCATCCAAGCACACTGCAAGCATGCAACACACAGTTCATGAGTTCAGGAGGACTTGA
TGCTATCAAGGTTCAAGCGAAAGCGTATTTGAGTTAACATGGTATAATTCGATTAATCACAAAC
AACGAGTATATATATAGAAACGGACACATGGTAAATCCTTATCTTTACAACCAACTTATAGAAA
CAGAATCGAGAGAAAATCAGAGAAAACGAACAAAGAGATAACTAGATACAAAACTAACACCCCG
GTAGTTGAAGGCGAACAATCTTACAAAACTAGCAAGACACTTGGTGAAGATGTCGGCATACTAC
AATAATTGCCTTAGTCTCTAACATCAGAAACCAATAATTCACTATACCTGCGCCCTTCTCCTGA
GCGCCGGTGAGGAGGATCAGCTCGACGACGTCCGGTGCCGCTGCCGTTGAGCGGGCAACGGCTG
CCAGGAGCAGGAGCAGCAAGGGCTCCGCATATCGACGACGCGGGAGGATCGGCATCTCGCCCGT
AGCCGCAGCGCGTGTGTGGACAGAACACGTACGAGGTGGGTGGTGGACTGGGTGGTCGATCTCG
CTGGGACAGCGAGACGACGAGGAGGAGGAGGAGTATTTATAGTGATGAGAAAGTGAGAACCCGC
CGTTGACGTCGAGTTTCGGCGAAGCACATATGCTGCAGGGATTCCACGCTGACGAAGTCGTCGC
TTCGTCGACAAGTGACCGACTTGCTTGGCTACCGTCACATCTGATCTGTGATCTGTCGCCGTAG
TCTTGTGAACTTAACTGAACACTTTCGTCGTAATATGCACGGCTTGCACGCTGGGTTTGGTTTT
GCTCAACTGGACAACTTGTTCATTCAGAGCTTCAACTACTAGCCTTTCGTGTGAGGCTGGAGAG
GCGTCGATCAATGTCTAACTCCGGGGAACCGAAAGAAAGTTTCAGAACAAAACATCCTTAAGGC
TATGTGGAAGTGCATAGCATTTAAAAAGTTATCAATTTTTTTTAAAAAAAATGTGAAGATAGAT
CAATATATAATATATCTTTCCGCTAACATGTGAGTTAAAATTCGATTTATACAATTCAGAACAA
AAATAACAAATTTGATCATGAAATACGCGTTCTATTTATAGTCAAATTTGTTATTTTTATTTCT
ATTGGTATAAGTTTTTAAATTTGCATGTTTGTGAAGTGACATATCACATATTGATCTATCCTAC
TAAAATTTTTTGATGACTTTTTAAGTAACATGCAAAAATAAGGGGATATTCCCTTAAGGATGAA
TTGAGTTTTCCAGGCTATGTTTTTCTCTCAAGTTTTCCAATCTCTACTCTCCCCTTTTTCACGC
GCAAGCTTCCCAAACGGCTAAACGATGTGTATTTTTTAAATAAAAGTTTCTATAAAAAATTATT
TTAGAAAATCATATTAATATATTTTTTAAAAAAACTAATATTTATTTAATCATGTGCTAATAAA
TTGTTCCGTTTTACGTTTGTGAGAAATAAGTTCTAACTCATTGAGAAGAACACAACCTAAGAAA
GTAGGAATGAACCAAACCGTGGGCTGGAACCTAATGAGGTCATGAGATCGAGTTGGTACCGGAC
TTGAACTGGTCATGGTGGAGAGGTGTAGAGTTTCAATGTTTCATGGAAGGTAGTGCAGGTGACC
GACGGGGTGGAATCCATACGCCCCAGGCCCGAGAGGTGGTAGAATCCGGCGAGGGTGAGACACT
GGCCATTCTCGGCCGCTGACAGCCGTATGATCCAGATAGCGCGGTCCAGATCGAGGCGAGCTGC
AGCGGTTCAGCGAGCCGATGCCGAGAATTAGGCACAAGAGGAGGTATGGGAGTGGCACTGCCGT
AGGGGCATTTTAGTTGGATGTTTGGACGCCTCTATGGCGACCGGAGGGTTCGTTGTCGTTGACC
CAGGGTCAATCTTTCTGCAGCGTCACTGCTACTGTGCCACTGTGCCATCAAGGCATCAACGTCG
CAGCATTTCTCCGTCGACGCGTGTTTTTGGTTGAGCGATGACGTCCGGTATTGAGATACACCCT
CCGTTTCAGAATATAGCAAGCTAGAACCAGTTAAGACTGTCATAGTACTACCGAATCTTGATAG
GGGCATGTTTTACTTGCAAGGTAGGTAACAATGCAACAAACACACTGCAACAATCATATGCAGA
AGAATATGCAGCCGATGTACTGAAATATGAAGTATTCGTAGTAATTCCTTTTCACCCGAGATGG
CCACTGTTTGACTTATTACAGGCGTCTGATTATCAGCAAAGCATGGCTATTAGTTGTTCACAGA
ACAAATGGTGAAAGATGATCTGCAGCTGCTGCTTCATCAAATAAGCCTGCATAAATATTCAGGG
AAGGGTGGTAGTCTGGGTCCAGCCCAATGTAAAATCATTTAGGCAGCTGGCTGCTACATGTGGG
GTTACACGGATACTCGCAGTCGATTTCTTTCACTTCATAGCTTCTCTCGAAATACCAATCCCCA
ATAGCCTCCGCGACAGTCTGCTCCACACAAGTGCAAATAGAAAAATATCAATCCATCTAGAACA
CTACCATTATCAGAGATAAACCAACTTTAGCTACTCTTTTACAGTCGTACAGTTCAGTGATTTT
CTGTTCTGAACTTTAGGACAGTTGAGTGATTTTAACCTCACCTTGTTACCGAGCACTGGGGAGG
CCTGTGAGTTCCATGAGATGTCGAATGGCGTTTGACAGTGAGTGAAACATGAATCAATGAAAAG
ACCCCAGTCCTTTTTGTCTTTCACAACCTCTATGTCATCGACAAATTTATTCCTGAATCCTACA
ATATGGAGAAGGAAAAGAATAATGAACTTTTGAGTTAAAAAAACAGGATAGTTACCAAATAAAC
CGAAACAGATTGACAAGCTTAAACCAACCATTGAATACTTGGATTTGTGTGGAACTACAATTTC
GAATGTCAGTTTTGCAACTGGACCATGACTGTCCAGGAAAGGATCCATCTGGCGCAAGGGCATT
TTGTAT
Conservation Information
Conserved circRNAs osa_circ_005173
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021