Plant Circular RNA Database

Detail information of Os02g0241600_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os02g0241600_circ_g.1
					
						ID in PlantcircBase
						osa_circ_014040
					
						Alias
						Os_ciR8379
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr2: 8007553-8010752  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						find_circ
					
						Parent gene
						
							Os02g0241600						
					
						Parent gene annotation
						
							Protein kinase, core domain containing protein. (Os02t0241600-01
)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os02g0241600_circ_g.2 Os02g0241600_circ_g.3 						
					
						Support reads
						2
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os02t0241600-01:5

General Information
CircRNA Name	Os02g0241600_circ_g.1
ID in PlantcircBase	osa_circ_014040
Alias	Os_ciR8379
Organism	Oryza sativa
Position	chr2: 8007553-8010752 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ue-circRNA
Identification method	find_circ
Parent gene	Os02g0241600
Parent gene annotation	Protein kinase, core domain containing protein. (Os02t0241600-01 )
Parent gene strand	+
Alternative splicing	Os02g0241600_circ_g.2 Os02g0241600_circ_g.3
Support reads	2
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os02t0241600-01:5

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TCAGCCAAGAGCAAGATGACAACAATAGGTCCTTCAAAGTACCATCTCTAAGAAATATCATGCT
TAAATCGACAAACTCTATGGAGGGTAAATTGCGATGgttgaccttgtagaatgaatccataaaa
tgattctttatttcaacatatattggagatggatgatctgccggatgatcaaggacaatccgac
gcacaccc

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							GTTGACCTTGTAGAATGAATCCATAAAATGATTCTTTATTTCAACATATATTGGAGATGGATGA
TCTGCCGGATGATCAAGGACAATCCGACGCACACCCTTCAGATCCAAATTGGTGGTCCTCACAT
GCGGAGCACAAGCTCGGATCAATTTCTCTGACTAAACAGGAAAGGAATTCGGGTTCGCCAGGAT
CTTCTCATTGTGGGGAAGGTGACCATTCATTATGGGCTGCCCAGACATTATGGTGTACTGGGTG
TTTATCAAGTCCAATACCCAATGGTTTTTATTCAATTATTCCTGTAAGTGTGAATTTCATACGA
GGCATTGAATTGTTAAATAAAAATATAAGTGACTCATCTGTACATTTTAATTTTAATCCTCGTT
TTAAAATTTGTAGGATAAGAAACTGAAGGAGCGTTTTGACACCATCCCGTCTCCAGATGATCTT
TATTCCCTTGGAATAGAGGGATTCAAAGCTGAGATAATTCTTGTGGATTTAGAGAAGGATAAAA
AACTATCTGCTATAAAGCAGCTATGTGCAGCATTGGTAAAAGGATTGAAATCGAACCCTGCTGC
AATGATAAAAAAGATTGCAGGGTTGGTAAGTTCTTCCTAAGATTCTCTATGCAATTGAAGACAA
TTGTGACATCTTCACTGCTAACCTTCAGAATACCACAAGCTGCAATCACTTGACAATTGCTTTG
CAAATGGTTTACAAAATCTTCTTGCTTGAAACTATTCCATTTTATTGTGCTGCAACCTTTTGAG
TACTACTTGATTCTTTTAAGTATGTAGTGGATTATATGTTTTCTTGAAAATAGAAATTACAATA
ACTCTATTGATAGCATTGATTATATTCTTTTTAGTTACTTTTATTATACATTTAAAAATTTCTA
ATTGTTTGTAGGTTTCTGACTTCTATAAACGGCCAAATCCGCAACTCAGTCCTGCAAGAACTTC
CTCTGAGGAAATTTCTCATTTCATGGAAAACCGTGGAGTTCAATTGCTGGGGCAAATTAGACAT
GGATCTTGTAGGCCCAGAGCAATATTATTCAAAGTTCTTGCAGATGCTGTTGGTATGGATTGTA
AGTTGCTGGTGGTAAGATTTATTGCCTTCTCATTAGTATGTCTGAACTTTGTAGTGGGATTCTT
CATGTACTTGTGAAATTCCATATAATTACATCAGTGTGGCATTTTAATGTGTGTAGGGCATTCC
GAATGAAGAATACCATGAATATGATGACTCATCCAAACATATGTCTGTTGTGGTTATGCTGAAA
TCTGTGGAGTTTCTAGTTGATCTTATGCGTTTTCCTGGACAACTAGTTCCATTCTCATCCAAGG
CTATAATTACATCACATATATCTGCAGCTGGAGAGAGTGACTCAGCTGATTATGATTCTTGTGA
TTCTCCTCTTGAACCTAATAGTCCTCTGTGTTCCCAACGGTATGCTTGTGTATTCCGTTTTAAT
GACATGTGTGTCTTGTCATGGTTCCTTTTGGCGATTTTGCCCCTTGACACATATCTAGTATTAT
TGTATTGGTATAAAATTCATACAGTTCCAGATGCTATGTGGTCCTGAACTATGTGTATCAAATT
TGAACCAGAGCCTGGGGTCATCCCTAATTGCAGTGTCTGCTTAAACGCGATATCCAAACATGTG
AAAAATACTATCTCCATTCATGAAGCTATAGCATGTTGAGTAGAGATAATACTGGTCTTTTCCA
TTTCTTTAGGTTTATGATCTACCTCCATTTTGTTCTTTTTTGGTGTACAGTAGCATGTGGAGCA
TTTACTGCTTGCAAATATTGTAGGTGTTGGACAGCAACTACTGTATGTTATGTGGTGTTTTTCG
TATATGAGGAGTGAGATGAGAAGAAGCAATTACCACCAAATTATAATCGTATTGTCGCTAGGAT
TAGATTTCAAGGATTAATTTTCCTTTTAAATTTACACAAAAGATTTGCTTGTTAAAGATTTTGT
TAGGAGTTTGTCTGGCCTGCTTCTTTTTATATAGGAGTGAAGGCACGATTGAATAGAGCAAGCA
GAAGTTAGAATCTAATCTCTCCCCCTCTCTGTTTCCTATGTTCCACCACGGCACCTGGGAAGCG
AGGGCTCTGGCCTCGCTCTTCTCGCTCTTCTGTCGGTCGAGCACAGCTACCACTGAGGCATTCG
GGCCCTCCCCAGATCCTAACATCGTAGCTATGAGAGTTCCAATTTATCAATTGTACCCATTTAA
TACTACCTCCGTCCCAAAATATAAGAATTTTTGGGTTGGACACGCTTATTAAGTAAGTAGGTAG
AATTAAAGGGGGAAGATTGTGATTGGTTGAGAAGATGAAGTAGGTGGAGAAACTAAATGGGGGA
ATGTTGTGATTGGTTGAGAAGAGAATGTAGGTGGAGAAGTTTCTATATTTTGGGACACATTTTG
AATGCTAAAAGTTGCTAATATTTTAGGACGGAGAGAGTAGAATTTAATTCTATTGCTATAGAAT
GTTGACATATTTGTTAAGATCTTTGTGGTCTTCCAACTTATTTTTTATGGCACTATTATCTTTA
GAGTAAATTTCACAAAACTACACATTTTGTGGTCTAAGTTGCAGAAAACCACACACACTTTGAC
ACTTGGCACTTAAGTACATATATTTTGGTAGTGTAGTTTCACAAAACCACACTATCAGTGAATG
GATTCACCTGCGAGATGACGTGATTGTTTCACCTAGGACAAGGACATGGCATCCTATTACCAGC
CATCGCATGAAATTAATAGGATGCAACGTCCTCATCCTAGATGGAACAACTATGTCATCTCACG
GGTGAATCCATTCATCGATAGTGTGGTTTTGTGAAACTAAACTACCAAAATAAATGTACTTAAG
TGCTAAGTGTCAAAATATGTGTTGTTTTATGCAACTTGAACCATAAAACTTGTAGTTTTGTGAA
ATTTACTCTTATGTTTATTACTAAAACTGAATCATTATTTGTGTGTTCCTCTGTTGACTACAGT
TTTTACAACATTTGTGTGCTTTAATTTTAGGAAATCAAAATTTTTAATTTTTTCTGATGGGCCA
TATTGCCATTTTACGTGTTTTTTTTCTTTCAGCCAAGAGCAAGATGACAACAATAGGTCCTTCA
AAGTACCATCTCTAAGAAATATCATGCTTAAATCGACAAACTCTATGGAGGGTAAATTGCGATG
						
					

			
		

Sequences
Splice junction sequence	TCAGCCAAGAGCAAGATGACAACAATAGGTCCTTCAAAGTACCATCTCTAAGAAATATCATGCT TAAATCGACAAACTCTATGGAGGGTAAATTGCGATGgttgaccttgtagaatgaatccataaaa tgattctttatttcaacatatattggagatggatgatctgccggatgatcaaggacaatccgac gcacaccc
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	GTTGACCTTGTAGAATGAATCCATAAAATGATTCTTTATTTCAACATATATTGGAGATGGATGA TCTGCCGGATGATCAAGGACAATCCGACGCACACCCTTCAGATCCAAATTGGTGGTCCTCACAT GCGGAGCACAAGCTCGGATCAATTTCTCTGACTAAACAGGAAAGGAATTCGGGTTCGCCAGGAT CTTCTCATTGTGGGGAAGGTGACCATTCATTATGGGCTGCCCAGACATTATGGTGTACTGGGTG TTTATCAAGTCCAATACCCAATGGTTTTTATTCAATTATTCCTGTAAGTGTGAATTTCATACGA GGCATTGAATTGTTAAATAAAAATATAAGTGACTCATCTGTACATTTTAATTTTAATCCTCGTT TTAAAATTTGTAGGATAAGAAACTGAAGGAGCGTTTTGACACCATCCCGTCTCCAGATGATCTT TATTCCCTTGGAATAGAGGGATTCAAAGCTGAGATAATTCTTGTGGATTTAGAGAAGGATAAAA AACTATCTGCTATAAAGCAGCTATGTGCAGCATTGGTAAAAGGATTGAAATCGAACCCTGCTGC AATGATAAAAAAGATTGCAGGGTTGGTAAGTTCTTCCTAAGATTCTCTATGCAATTGAAGACAA TTGTGACATCTTCACTGCTAACCTTCAGAATACCACAAGCTGCAATCACTTGACAATTGCTTTG CAAATGGTTTACAAAATCTTCTTGCTTGAAACTATTCCATTTTATTGTGCTGCAACCTTTTGAG TACTACTTGATTCTTTTAAGTATGTAGTGGATTATATGTTTTCTTGAAAATAGAAATTACAATA ACTCTATTGATAGCATTGATTATATTCTTTTTAGTTACTTTTATTATACATTTAAAAATTTCTA ATTGTTTGTAGGTTTCTGACTTCTATAAACGGCCAAATCCGCAACTCAGTCCTGCAAGAACTTC CTCTGAGGAAATTTCTCATTTCATGGAAAACCGTGGAGTTCAATTGCTGGGGCAAATTAGACAT GGATCTTGTAGGCCCAGAGCAATATTATTCAAAGTTCTTGCAGATGCTGTTGGTATGGATTGTA AGTTGCTGGTGGTAAGATTTATTGCCTTCTCATTAGTATGTCTGAACTTTGTAGTGGGATTCTT CATGTACTTGTGAAATTCCATATAATTACATCAGTGTGGCATTTTAATGTGTGTAGGGCATTCC GAATGAAGAATACCATGAATATGATGACTCATCCAAACATATGTCTGTTGTGGTTATGCTGAAA TCTGTGGAGTTTCTAGTTGATCTTATGCGTTTTCCTGGACAACTAGTTCCATTCTCATCCAAGG CTATAATTACATCACATATATCTGCAGCTGGAGAGAGTGACTCAGCTGATTATGATTCTTGTGA TTCTCCTCTTGAACCTAATAGTCCTCTGTGTTCCCAACGGTATGCTTGTGTATTCCGTTTTAAT GACATGTGTGTCTTGTCATGGTTCCTTTTGGCGATTTTGCCCCTTGACACATATCTAGTATTAT TGTATTGGTATAAAATTCATACAGTTCCAGATGCTATGTGGTCCTGAACTATGTGTATCAAATT TGAACCAGAGCCTGGGGTCATCCCTAATTGCAGTGTCTGCTTAAACGCGATATCCAAACATGTG AAAAATACTATCTCCATTCATGAAGCTATAGCATGTTGAGTAGAGATAATACTGGTCTTTTCCA TTTCTTTAGGTTTATGATCTACCTCCATTTTGTTCTTTTTTGGTGTACAGTAGCATGTGGAGCA TTTACTGCTTGCAAATATTGTAGGTGTTGGACAGCAACTACTGTATGTTATGTGGTGTTTTTCG TATATGAGGAGTGAGATGAGAAGAAGCAATTACCACCAAATTATAATCGTATTGTCGCTAGGAT TAGATTTCAAGGATTAATTTTCCTTTTAAATTTACACAAAAGATTTGCTTGTTAAAGATTTTGT TAGGAGTTTGTCTGGCCTGCTTCTTTTTATATAGGAGTGAAGGCACGATTGAATAGAGCAAGCA GAAGTTAGAATCTAATCTCTCCCCCTCTCTGTTTCCTATGTTCCACCACGGCACCTGGGAAGCG AGGGCTCTGGCCTCGCTCTTCTCGCTCTTCTGTCGGTCGAGCACAGCTACCACTGAGGCATTCG GGCCCTCCCCAGATCCTAACATCGTAGCTATGAGAGTTCCAATTTATCAATTGTACCCATTTAA TACTACCTCCGTCCCAAAATATAAGAATTTTTGGGTTGGACACGCTTATTAAGTAAGTAGGTAG AATTAAAGGGGGAAGATTGTGATTGGTTGAGAAGATGAAGTAGGTGGAGAAACTAAATGGGGGA ATGTTGTGATTGGTTGAGAAGAGAATGTAGGTGGAGAAGTTTCTATATTTTGGGACACATTTTG AATGCTAAAAGTTGCTAATATTTTAGGACGGAGAGAGTAGAATTTAATTCTATTGCTATAGAAT GTTGACATATTTGTTAAGATCTTTGTGGTCTTCCAACTTATTTTTTATGGCACTATTATCTTTA GAGTAAATTTCACAAAACTACACATTTTGTGGTCTAAGTTGCAGAAAACCACACACACTTTGAC ACTTGGCACTTAAGTACATATATTTTGGTAGTGTAGTTTCACAAAACCACACTATCAGTGAATG GATTCACCTGCGAGATGACGTGATTGTTTCACCTAGGACAAGGACATGGCATCCTATTACCAGC CATCGCATGAAATTAATAGGATGCAACGTCCTCATCCTAGATGGAACAACTATGTCATCTCACG GGTGAATCCATTCATCGATAGTGTGGTTTTGTGAAACTAAACTACCAAAATAAATGTACTTAAG TGCTAAGTGTCAAAATATGTGTTGTTTTATGCAACTTGAACCATAAAACTTGTAGTTTTGTGAA ATTTACTCTTATGTTTATTACTAAAACTGAATCATTATTTGTGTGTTCCTCTGTTGACTACAGT TTTTACAACATTTGTGTGCTTTAATTTTAGGAAATCAAAATTTTTAATTTTTTCTGATGGGCCA TATTGCCATTTTACGTGTTTTTTTTCTTTCAGCCAAGAGCAAGATGACAACAATAGGTCCTTCA AAGTACCATCTCTAAGAAATATCATGCTTAAATCGACAAACTCTATGGAGGGTAAATTGCGATG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.131424576

Conservation Information
Conserved circRNAs	NA
PMCS	0.131424576

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							8007610-8007562(+)
8007578-8008948(-)
						
						Potential amino acid sequence
						
							MDDLPDDQGQSDAHPSDPNWWSSHAEHKLGSISLTKQERNSGSPGSSHCGEGDHSLWAAQTLWC
TGCLSSPIPNGFYSIIPDKKLKERFDTIPSPDDLYSLGIEGFKAEIILVDLEKDKKLSAIKQLC
AALVKGLKSNPAAMIKKIAGLVSDFYKRPNPQLSPARTSSEEISHFMENRGVQLLGQIRHGSCR
PRAILFKVLADAVGMDCKLLVGIPNEEYHEYDDSSKHMSVVVMLKSVEFLVDLMRFPGQLVPFS
SKAIITSHISAAGESDSADYDSCDSPLEPNSPLCSQRQEQDDNNRSFKVPSLRNIMLKSTNSME
GKLRWLTL*(+)
MDSFYKVNHRNLPSIEFVDLSMIFLRDGTLKDLLLSSCSWRWEHRGLLGSRGESQES*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	8007610-8007562(+) 8007578-8008948(-)
Potential amino acid sequence	MDDLPDDQGQSDAHPSDPNWWSSHAEHKLGSISLTKQERNSGSPGSSHCGEGDHSLWAAQTLWC TGCLSSPIPNGFYSIIPDKKLKERFDTIPSPDDLYSLGIEGFKAEIILVDLEKDKKLSAIKQLC AALVKGLKSNPAAMIKKIAGLVSDFYKRPNPQLSPARTSSEEISHFMENRGVQLLGQIRHGSCR PRAILFKVLADAVGMDCKLLVGIPNEEYHEYDDSSKHMSVVVMLKSVEFLVDLMRFPGQLVPFS SKAIITSHISAAGESDSADYDSCDSPLEPNSPLCSQRQEQDDNNRSFKVPSLRNIMLKSTNSME GKLRWLTL(+) MDSFYKVNHRNLPSIEFVDLSMIFLRDGTLKDLLLSSCSWRWEHRGLLGSRGESQES(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015

circRNA

Detail information of Os02g0241600_circ_g.1

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