Detail information of AT2G40760_circ_g.5


General Information
CircRNA Name AT2G40760_circ_g.5
ID in PlantcircBase ath_circ_017679
Alias NA
Organism Arabidpsis thaliana
Position chr2: 17010941-17011510  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method PcircRNA_finder, circRNA_finder, find_circ
Parent gene AT2G40760
Parent gene annotation Rhodanese-like domain-containing protein 7
Parent gene strand +
Alternative splicing AT2G40760_circ_g.1 AT2G40760_circ_g.2 AT2G40760_circ_g.3 AT2G40760_circ_g.4
Support reads 3
Tissues aerial
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G40760.1:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGAAAAACCGAAGACGCTGCCACGAATTGCTATGTATTGCACTGGAGGAATCAGGTGTGAGAAA
GCTTCAAGCCTCCTTCTTAGCCAAGGTTTCGAAGAGattgttacgcttggaattcctagtgtct
cgccaattgaaagagttggaacatatgtgagtcccgaagaatggaacgaactgatcagtgatcc
agaaactg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATTGTTACGCTTGGAATTCCTAGTGTCTCGCCAATTGAAAGAGTTGGAACATATGTGAGTCCCG
AAGAATGGAACGAACTGATCAGTGATCCAGAAACTGTGAGTCCTCTTTTTACCATCTTGTAGCA
AGTTTAGTCAAGAACTCAGTGAAATTTGAATAAAGACTTGATAACTGTTTATACACTTAGGACT
CATTTTCTCTGCTCTCTCTTGATTAAATGTTCTGGTAGATAGATCGATGATATCAGATCTTTAA
GTACTATTGTGTTTCAGGTAGTGATTGATGTGCGTAATACCTATGAGACTAGAATTGGGAAGTT
TAAAGGAGCTGTGGATCCATGTACCACAGCTTTCAGAAATTTCCCATCTTGGGTGGAGAATCAA
TTTGCATTGAAGCAAGAAGGCAATGAAACGCAAGCAAAGGTGGAGAAAGAGGATTTTTCTGAAA
TCACCCATAAAGAAGACAAAGCTGAAAAACCGAAGACGCTGCCACGAATTGCTATGTATTGCAC
TGGAGGAATCAGGTGTGAGAAAGCTTCAAGCCTCCTTCTTAGCCAAGGTTTCGAAGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.154786302
Functional Information
Coding potential Y
Potential coding position 17011442-17011507(+)
Potential amino acid sequence MYCTGGIRCEKASSLLLSQGFEEIVTLGIPSVSPIERVGTYVSPEEWNELISDPETVVIDVRNT
YETRIGKFKGAVDPCTTAFRNFPSWVENQFALKQEGNETQAKVEKEDFSEITHKEDKAEKPKTL
PRIAMYCTGGIRCEKASSLLLSQGFEEIVTLGIPSVSPIERVGTYVSPEEWNELISDPETVVID
VRNTYETRIGKFKGAVDPCTTAFRNFPSWVENQFALKQEGNETQAKVEKEDFSEITHKEDKAEK
PKTLPRIAMYCTGGIRCEKASSLLLSQGFEEIVTLGIPSVSPIERVGTYVSPEEWNELISDPET
VVIDVRNTYETRIGKFKGAVDPCTTAFRNFPSWVENQFALKQEGNETQAKVEKEDFSEITHKED
KAEKPKTLPRIAMYCTGGIRCEKASSLLLSQGFEE(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017