Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | Os03g0711800_circ_g.3 |
ID in PlantcircBase | osa_circ_021246 |
Alias | Os_ciR8774 |
Organism | Oryza sativa |
Position | chr3: 28755395-28758040 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, PcircRNA_finder, circRNA_finder, find_circ |
Parent gene | Os03g0711800 |
Parent gene annotation |
Similar to IRE homolog 1 (Fragment). (Os03t0711800-01);Similar t o predicted protein. (Os03t0711800-02);Similar to predicted prot ein. (Os03t0711800-03) |
Parent gene strand | - |
Alternative splicing | Os03g0711800_circ_g.4 |
Support reads | 2/34 |
Tissues | root/shoot, root, seed, pistil |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os03t0711800-01:5 Os03t0711800-03:5 Os03t0711800-02:5 |
Conservation Information | |
---|---|
Conserved circRNAs | osi_circ_005058* osi_circ_013501 |
PMCS | 0.362466204 |
Functional Information | |
---|---|
Coding potential | Y |
Potential coding position |
28757956-28755410(+) 28757686-28755397(-) |
Potential amino acid sequence |
MQVTNRESALSSSRGVVAMHRAISASSTIFICPS*(+) MDKVDSASTVMDEEDDVVRSLRASPVHPVKDRTSIDDFEIIKPISRGAFGRVFLAKKRTTGDLF AIKVLRKADMIRKNAVESILAERDILITVRNPFVVRFFYSFTSRENLYLVMEYLNGGDLYSLLR NLGCLDEDVARIYLAEVVLALEYLHSMHIVHRDLKPDNLLIAHDGHIKIVELADIARCIATTPL DEERALSLLVTCIEDLQEIVNRRKHEALTVQTFGTRIEKLHREKYLLLCDSVDMDKVDSASTVM DEEDDVVRSLRASPVHPVKDRTSIDDFEIIKPISRGAFGRVFLAKKRTTGDLFAIKVLRKADMI RKNAVESILAERDILITVRNPFVVRFFYSFTSRENLYLVMEYLNGGDLYSLLRNLGCLDEDVAR IYLAEVVLALEYLHSMHIVHRDLKPDNLLIAHDGHIKIVELADIARCIATTPLDEERALSLLVT CIEDLQEIVNRRKHEALTVQTFGTRIEKLHREKYLLLCDSVDMDKVDSASTVMDEEDDVVRSLR ASPVHPVKDRTSIDDFEIIKPISRGAFGRVFLAKKRTTGDLFAIKVLRKADMIRKNAVESILAE RDILITVRNPFVVRFFYSFTSRENLYLVMEYLNGGDLYSLLRNLGCLDEDVARIYLAEVVLALE YLHSMHIVHRDLKPDNLLIAHDGHIKIVELADIARCIATTPLDEERALSLLVTCIEDLQEIVNR RKHEALTVQTFGTRIEKLHREKYLLLCDSVDMDKVDSASTVMDEEDDVVRSLRASPVHPVKDRT SIDDFEIIKPISRGAFGRVFLAKKRTTGDLFAIKVLRKADMIRKNAVESILAERDILITVRNPF VVRFFYSFTSRENLYLVMEYLNGGDLYSLLRNLGCLDEDVARIYLAEVVLALEYLHSMHIVHRD LKPDNLLIAHDGHIK(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
---|---|
References | Ye et al., 2015;Chu et al., 2017 |