Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Os03g0711800_circ_g.3 |
| ID in PlantcircBase | osa_circ_021246 |
| Alias | Os_ciR8774 |
| Organism | Oryza sativa |
| Position | chr3: 28755395-28758040 JBrowse» |
| Reference genome | IRGSP-1.0.38 |
| Type | e-circRNA |
| Identification method | CIRCexplorer, PcircRNA_finder, circRNA_finder, find_circ |
| Parent gene | Os03g0711800 |
| Parent gene annotation |
Similar to IRE homolog 1 (Fragment). (Os03t0711800-01);Similar t o predicted protein. (Os03t0711800-02);Similar to predicted prot ein. (Os03t0711800-03) |
| Parent gene strand | - |
| Alternative splicing | Os03g0711800_circ_g.4 |
| Support reads | 2/34 |
| Tissues | root/shoot, root, seed, pistil |
| Exon boundary | Yes-Yes |
| Splicing signals | CT-AC |
| Number of exons covered | Os03t0711800-01:5 Os03t0711800-03:5 Os03t0711800-02:5 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | osi_circ_005058* osi_circ_013501 |
| PMCS | 0.362466204 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
28757956-28755410(+) 28757686-28755397(-) |
| Potential amino acid sequence |
MQVTNRESALSSSRGVVAMHRAISASSTIFICPS*(+) MDKVDSASTVMDEEDDVVRSLRASPVHPVKDRTSIDDFEIIKPISRGAFGRVFLAKKRTTGDLF AIKVLRKADMIRKNAVESILAERDILITVRNPFVVRFFYSFTSRENLYLVMEYLNGGDLYSLLR NLGCLDEDVARIYLAEVVLALEYLHSMHIVHRDLKPDNLLIAHDGHIKIVELADIARCIATTPL DEERALSLLVTCIEDLQEIVNRRKHEALTVQTFGTRIEKLHREKYLLLCDSVDMDKVDSASTVM DEEDDVVRSLRASPVHPVKDRTSIDDFEIIKPISRGAFGRVFLAKKRTTGDLFAIKVLRKADMI RKNAVESILAERDILITVRNPFVVRFFYSFTSRENLYLVMEYLNGGDLYSLLRNLGCLDEDVAR IYLAEVVLALEYLHSMHIVHRDLKPDNLLIAHDGHIKIVELADIARCIATTPLDEERALSLLVT CIEDLQEIVNRRKHEALTVQTFGTRIEKLHREKYLLLCDSVDMDKVDSASTVMDEEDDVVRSLR ASPVHPVKDRTSIDDFEIIKPISRGAFGRVFLAKKRTTGDLFAIKVLRKADMIRKNAVESILAE RDILITVRNPFVVRFFYSFTSRENLYLVMEYLNGGDLYSLLRNLGCLDEDVARIYLAEVVLALE YLHSMHIVHRDLKPDNLLIAHDGHIKIVELADIARCIATTPLDEERALSLLVTCIEDLQEIVNR RKHEALTVQTFGTRIEKLHREKYLLLCDSVDMDKVDSASTVMDEEDDVVRSLRASPVHPVKDRT SIDDFEIIKPISRGAFGRVFLAKKRTTGDLFAIKVLRKADMIRKNAVESILAERDILITVRNPF VVRFFYSFTSRENLYLVMEYLNGGDLYSLLRNLGCLDEDVARIYLAEVVLALEYLHSMHIVHRD LKPDNLLIAHDGHIK(-) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Ye et al., 2015;Chu et al., 2017 |