Detail information of Os03g0711800_circ_g.3


General Information
CircRNA Name Os03g0711800_circ_g.3
ID in PlantcircBase osa_circ_021246
Alias Os_ciR8774
Organism Oryza sativa
Position chr3: 28755395-28758040  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, PcircRNA_finder, circRNA_finder, find_circ
Parent gene Os03g0711800
Parent gene annotation Similar to IRE homolog 1 (Fragment). (Os03t0711800-01);Similar t
o predicted protein. (Os03t0711800-02);Similar to predicted prot
ein. (Os03t0711800-03)
Parent gene strand -
Alternative splicing Os03g0711800_circ_g.4
Support reads 2/34
Tissues root/shoot, root, seed, pistil
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os03t0711800-01:5
Os03t0711800-03:5
Os03t0711800-02:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTTGCAGATCTTCTATGCAGGTAACCAATAGGGAGAGTGCCCTTTCTTCATCTAGAGGAGTAGT
TGCAATGCACCGCGCAATATCAGCAAGTTCAACAATctttatatgcccgtcatgagctatcaat
aagttgtcaggtttaagatctctatgaactatgtgcatagagtgcaaatattccaaagctagca
cctgcaga
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 179
Transcript exons: 28755395-28755476,28757944-28758040
CTTTATATGCCCGTCATGAGCTATCAATAAGTTGTCAGGTTTAAGATCTCTATGAACTATGTGC
ATAGAGTGCAAATATTCCGCAGATCTTCTATGCAGGTAACCAATAGGGAGAGTGCCCTTTCTTC
ATCTAGAGGAGTAGTTGCAATGCACCGCGCAATATCAGCAAGTTCAACAAT

Transcript length: 735
Transcript exons: 28755395-28755487,28755563-28755703,28755780-28755872,28
757484-28757718,28757868-28758040
CTTTATATGCCCGTCATGAGCTATCAATAAGTTGTCAGGTTTAAGATCTCTATGAACTATGTGC
ATAGAGTGCAAATATTCCAAAGCTAGCACAACTTCTGCAAGGTATATACGAGCAACATCTTCAT
CCAAGCACCCTAAATTTCTCAGTAGAGAATACAGGTCCCCTCCATTCAGGTACTCCATGACTAG
ATACAAATTTTCCCGGGAGGTAAAAGAATAGAAGAAACGAACCACAAAAGGATTCCTCACTGTA
ATCAAGATATCACGTTCAGCCAATATACTCTCAACAGCATTTTTCCGAATCATATCTGCCTTCC
TTAATACCTTTATAGCAAAGAGGTCTCCTGTAGTTCTTTTCTTGGCCAAGAAAACACGTCCAAA
TGCTCCACGGCTGATAGGTTTAATGATTTCGAAGTCATCAATCGAAGTACGATCCTTGACTGGG
TGAACAGGACTAGCTCGTAAGCTACGGACAACATCATCTTCTTCATCCATTACAGTACTCGCTG
AATCAACTTTGTCCATATCAACCGAATCACAAAGCAGTAGGTACTTCTCCCGGTGGAGTTTTTC
TATACGTGTGCCAAATGTCTGCACCGTGAGAGCCTCATGCTTCCTACGATTGACAATTTCTTGC
AGATCTTCTATGCAGGTAACCAATAGGGAGAGTGCCCTTTCTTCATCTAGAGGAGTAGTTGCAA
TGCACCGCGCAATATCAGCAAGTTCAACAAT

Genomic sequence CTTTATATGCCCGTCATGAGCTATCAATAAGTTGTCAGGTTTAAGATCTCTATGAACTATGTGC
ATAGAGTGCAAATATTCCAAAGCTAGCACCTGCAGAATAAAATGATTATCAGACAAAGGAAAAG
TGAAAATGGAAGAAATAAATTGTTAGTAAAAGAAACTTACAACTTCTGCAAGGTATATACGAGC
AACATCTTCATCCAAGCACCCTAAATTTCTCAGTAGAGAATACAGGTCCCCTCCATTCAGGTAC
TCCATGACTAGATACAAATTTTCCCGGGAGGTAAAAGAATAGAAGAAACGAACCTTAAAAGAAC
ATAACCAATTCAGAACCACAGTATAGCTTTCAATGATGAAGGGTCGCATTTGCAAGTTCACTCA
CCACAAAAGGATTCCTCACTGTAATCAAGATATCACGTTCAGCCAATATACTCTCAACAGCATT
TTTCCGAATCATATCTGCCTTCCTTAATACCTGTTTCAAAAGTAAGCAACTATTGTTAGACCAC
ATGGATGCCCCATCCATCCCAAACCGAAAAACAAAAGCTAATAATAAAGGGAGTTTAGCAGTCA
AGCCCCCAAACTATTGCTTTACATCTTAGAGCTATCATGCTGAGCAGAGGCAAGGTGTTGTGTG
CTCAGCAAAACCAAAATTACTATACCAATTTATCATTACTTCCTTTTTTGTGAGGAGTCAATTC
ATCATTCATGTGAACTAAAGTCACTTCAATCTAAAACCTATGATGGTCAAGTTGTCACAAGTAA
AGCATGAACATGATGGGCCGCTCCACTGTCATTCTGATCCCATTTTTATAAGTAAGCTATGACT
ATCAAGGAGACTAATGCAGGTAAAAATAACTACTTAGAGTCCAATATCATGTCCAGTCTACACC
ATAGTCTAGAAAACAAAAACTACCAAACCAAACAGGCAAACACACCATCAAAATTTTGCCACTA
CCAAAACTTTGGCATTGCCCATATATTTGTCTCTTGTTGGCACAAATTGGCACCAAACCAAACC
TACCAACTCTACCCTACCAAAATGTGATAGTGCCAAAAGTTGCCAAAGATACGGCATTACCAAA
CTTTTGGTAGGGTATCGAACCAAAATGTGATAGTGCCAAAACAGCATAATGATTTAACGGGAGC
AACTAAATGGATCCCATTGGAACCGACTCCATATTAGTTAACTTTTTAAAAGCAAACAGTCATA
TAATTTTAACATATCCTGTAATCACATAAGTTACTTATCTAACAAGACGCAGATTTGATTAAAA
AACAAGGGATGCCTAACTAATGAAATCGAGTGCAGTTTCTTTCTCGAATGAATTTTAGAACAAG
TGATATAATTCGTAACATTGACCACATGTACCAAATGAACCAGCGGAACAAGTGGTACAGCCAG
GTTTTTGTAGTATGGATAGTGTACTACAGTACTATAAATATGAAGAGGTGTACTACAAATATGA
AGATGTGTACTATAAACATCAAGGTGTTAATCTTTTTTGTGGTCAACTAGTCAAACTGGGAGCA
AATTAAAAAAGCAAACGCGAGAAATACCATCTCTCTAATCTTCCTTCTCTGAACATTGAAGGTC
CACAGGTATTTCCTTTCTTTTGCAAAAGTTTTCAATCCAATAATTTGACCATGTCATGTTGATC
ACAAGGGGTCCTTGATAATAAATAATGAATGACTTCCAGCTGGTGGTTCTCATAGAAATGTGTT
GTTTAGAAAGGTATGCATAAATGTACGAAAAACCTCAAGGCCCTTTCTAAAGTATCATTGCAAT
AATATCACAATGGCAGGGGTTATCAACTGAACAAAACTACCGCCGAGTATCGACAAGAACAAAT
ATTCTTGAGTGTGTTTTATTGAGTTTTGGGGAAGAAGACTGGCAAGTCAACATATTTACATCAA
AAGCAATTTCCTTTCCCCTTTTTTGCATGCTAAAATTCTGGTTTGCGTCTGAAAGATAGTCATA
TAGCAATATTTTTGGTTTTTGGTCAAGAATGCCTACAACATTACAGGTACAACCAAGGAAAGCA
AGTCTGGGTACATAAGGGAACAAATATATGGCAACAAATACCTTTATAGCAAAGAGGTCTCCTG
TAGTTCTTTTCTTGGCCAAGAAAACACGTCCAAATGCTCCACGGCTGATAGGTTTAATGATTTC
GAAGTCATCAATCGAAGTACGATCCTTGACTGGGTGAACAGGACTAGCTCGTAAGCTACGGACA
ACATCATCTTCTTCATCCATTACAGTACTCGCTGAATCAACTTTGTCCATATCAACCGAATCAC
AAAGCAGTAGGTACTTCTCCCTAAGAAATTATATAAATGTGAAGGGAAATTACAAATGGAAACT
AATATAAGTGCTAAAAGTGACCTGCAAGAATTATTTTCATGTGCTTATTTAGTATAATGTCAAC
TAAGATAAGCCACTTGTGTAGTGAACTCAGCAGAGACTCACCGGTGGAGTTTTTCTATACGTGT
GCCAAATGTCTGCACCGTGAGAGCCTCATGCTTCCTACGATTGACAATTTCTTGCAGATCTTCT
ATGCAGGTAACCAATAGGGAGAGTGCCCTTTCTTCATCTAGAGGAGTAGTTGCAATGCACCGCG
CAATATCAGCAAGTTCAACAAT
Conservation Information
Conserved circRNAs osi_circ_005058* osi_circ_013501
PMCS 0.362466204
Functional Information
Coding potential Y
Potential coding position 28757956-28755410(+)
28757686-28755397(-)
Potential amino acid sequence MQVTNRESALSSSRGVVAMHRAISASSTIFICPS*(+)
MDKVDSASTVMDEEDDVVRSLRASPVHPVKDRTSIDDFEIIKPISRGAFGRVFLAKKRTTGDLF
AIKVLRKADMIRKNAVESILAERDILITVRNPFVVRFFYSFTSRENLYLVMEYLNGGDLYSLLR
NLGCLDEDVARIYLAEVVLALEYLHSMHIVHRDLKPDNLLIAHDGHIKIVELADIARCIATTPL
DEERALSLLVTCIEDLQEIVNRRKHEALTVQTFGTRIEKLHREKYLLLCDSVDMDKVDSASTVM
DEEDDVVRSLRASPVHPVKDRTSIDDFEIIKPISRGAFGRVFLAKKRTTGDLFAIKVLRKADMI
RKNAVESILAERDILITVRNPFVVRFFYSFTSRENLYLVMEYLNGGDLYSLLRNLGCLDEDVAR
IYLAEVVLALEYLHSMHIVHRDLKPDNLLIAHDGHIKIVELADIARCIATTPLDEERALSLLVT
CIEDLQEIVNRRKHEALTVQTFGTRIEKLHREKYLLLCDSVDMDKVDSASTVMDEEDDVVRSLR
ASPVHPVKDRTSIDDFEIIKPISRGAFGRVFLAKKRTTGDLFAIKVLRKADMIRKNAVESILAE
RDILITVRNPFVVRFFYSFTSRENLYLVMEYLNGGDLYSLLRNLGCLDEDVARIYLAEVVLALE
YLHSMHIVHRDLKPDNLLIAHDGHIKIVELADIARCIATTPLDEERALSLLVTCIEDLQEIVNR
RKHEALTVQTFGTRIEKLHREKYLLLCDSVDMDKVDSASTVMDEEDDVVRSLRASPVHPVKDRT
SIDDFEIIKPISRGAFGRVFLAKKRTTGDLFAIKVLRKADMIRKNAVESILAERDILITVRNPF
VVRFFYSFTSRENLYLVMEYLNGGDLYSLLRNLGCLDEDVARIYLAEVVLALEYLHSMHIVHRD
LKPDNLLIAHDGHIK(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017