Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G10180_circ_g.2 |
ID in PlantcircBase | ath_circ_001831 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr1: 3339047-3341170 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, PcircRNA_finder |
Parent gene | AT1G10180 |
Parent gene annotation |
Exocyst complex component EXO84C |
Parent gene strand | - |
Alternative splicing | AT1G10180_circ_g.1 |
Support reads | 1 |
Tissues | whole_plant |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT1G10180.1:4 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.131481321 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
3341144-3339049(-) |
Potential amino acid sequence |
MDLKDAVENMCGDMRTKYLAFLRISEEAVEMEHELVELRKHISSQGILVQDLMAGVCREMDDWN RLPGDVHDAEVEEDPLPNEVTDPKSEFLEKIDLLLAEHKVDEALEAMDAEERSSPDLKGSVEMS SYKSAFMERKAVLEDQLLRIAKQPSICVAELKHALIGLIRLGKGPSAHQLLLKFYATSLRRRIE AFLPSCLTCPNTFPATLSKLVFSNISVATKESAAMFGDDDNPAYSNKVVQWAEREVEYLVRLVK ENASPSETASALRAASICLQDCLNYCKVLEPQGLFLSKLFLVLFRPYVEEVLELNFRRARRVIF DLNETDEGLESPSDFVTILSEFAIASDTMMTDCSIRFMQIVQDILEQLTHLVVLHFGESVLTRI LQLYDKYIDFLIKALPGHSDEDGLPELQDNTVLARAETDSEQLALLGAAFTILDELLPRSLVKV WKLQIENGGGEGENSAALNSSAAPELKEWKRHMVQAFDKLRNYFCLQFVLSFIYSREGLTRLDA LIYLTETPDDLHLPSLPFQALFSKLQQLAIIAGDVLLGKEKLQKILLARLTETVIIWLSNEQEF WSAFEDESNPLQPSGLQQGIRKLCCELMDLKDAVENMCGDMRTKYLAFLRISEEAVEMEHELVE LRKHISSQGILVQDLMAGVCREMDDWNRLPGDVHDAEVEEDPLPNEVTDPKSEFLEKIDLLLAE HKVDEALEAMDAEERSSPDLKGSVEMSSYKSAFMERKAVLEDQLLRIAKQPSICVAELKHALIG LIRLGKGPSAHQLLLKFYATSLRRRIEAFLPSCLTCPNTFPATLSKLVFSNISVATKESAAMFG DDDNPAYSNKVVQWAEREVEYLVRLVKENASPSETASALRAASICLQDCLNYCKVLEPQGLFLS KLFLVLFRPYVEEVLELNFRRARRVIFDLNETDEGLESPSDFVTILSEFAIASDTMMTDCSIRF MQIVQDILEQLTHLVVLHFGESVLTRILQLYDKYIDFLIKALPGHSDEDGLPELQDNTVLARAE TDSEQLALLGAAFTILDELLPRSLVKVWKLQIENGGGEGENSAALNSSAAPELKEWKRHMVQAF DKLRNYFCLQFVLSFIYSREGLTRLDALIYLTETPDDLHLPSLPFQALFSKLQQLAIIAGDVLL GKEKLQKILLARLTETVIIWLSNEQEFWSAFEDESNPLQPSGLQQGIRKLCCELMDLKDAVENM CGDMRTKYLAFLRISEEAVEMEHELVELRKHISSQGILVQDLMAGVCREMDDWNRLPGDVHDAE VEEDPLPNEVTDPKSEFLEKIDLLLAEHKVDEALEAMDAEERSSPDLKGSVEMSSYKSAFMERK AVLEDQLLRIAKQPSICVAELKHALIGLIRLGKGPSAHQLLLKFYATSLRRRIEAFLPSCLTCP NTFPATLSKLVFSNISVATKESAAMFGDDDNPAYSNKVVQWAEREVEYLVRLVKENASPSETAS ALRAASICLQDCLNYCKVLEPQGLFLSKLFLVLFRPYVEEVLELNFRRARRVIFDLNETDEGLE SPSDFVTILSEFAIASDTMMTDCSIRFMQIVQDILEQLTHLVVLHFGESVLTRILQLYDKYIDF LIKALPGHSDEDGLPELQDNTVLARAETDSEQLALLGAAFTILDELLPRSLVKVWKLQIENGGG EGENSAALNSSAAPELKEWKRHMVQAFDKLRNYFCLQFVLSFIYSREGLTRLDALIYLTETPDD LHLPSLPFQALFSKLQQLAIIAGDVLLGKEKLQKILLARLTETVIIWLSNEQEFWSAFEDESNP LQPSGLQQGIRKLCCELMDLKDAVENMCGDMRTKYLAFLRISEEAVEMEHELVELRKHISSQGI LVQDLMAGVCREMDDWNRLPGDVHDAEVEEDPLPNEVTDPKSEFLEKIDLLLAEHKVDEALEAM DAEERSSPDLKGSVEMSSYKSAFMERKAVLEDQLLRIAKQPSICVAELKHALIGLIRLGKGPSA HQLLLKFYATSLRRRIEAFLPSCLTCPNTFPATLSKLVFSNISVATKESAAMFGDDDNPAYSNK VVQWAEREVEYLVRLVKENASPSETASALRAASICLQDCLNYCKVLEPQGLFLSKLFLVLFRPY VEEVLELNFRRARRVIFDLNETDEGLESPSDFVTILSEFAIASDTMMTDCSIRFMQIVQDILEQ LTHLVVLHFGESVLTRILQLYDKYIDFLIKALPGHSDEDGLPELQDNTVLARAETDSEQLALLG AAFTILDELLPRSLVKVWKLQIENGGGEGENSAALNSSAAPELKEWKRHMVQAFDKLRNYFCLQ FVLSFIYSREGLTRLDALIYLTETPDDLHLPSLPFQALFSKLQQLAIIAGDVLLGKEKLQKILL ARLTETVIIWLSNEQEFWSAFEDESNPLQPSGLQQ(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |