Detail information of AT1G10180_circ_g.2


General Information
CircRNA Name AT1G10180_circ_g.2
ID in PlantcircBase ath_circ_001831
Alias NA
Organism Arabidpsis thaliana
Position chr1: 3339047-3341170  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer, PcircRNA_finder
Parent gene AT1G10180
Parent gene annotation Exocyst complex component EXO84C
Parent gene strand -
Alternative splicing AT1G10180_circ_g.1
Support reads 1
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT1G10180.1:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTACCTTAAGAAAGCAAGGTACTTGGTACGCATATCACCGCACATATTTTCCACAGCATCCTT
TAAATCCATAAGCTCACAGCAAAGCTTTCTAATCCCctgttgcaatccagatggctgaagtgga
tttgactcgtcctcgaatgcactccaaaactcctgctcgtttgatagccagattataaccgtct
ctgttaat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGTTGCAATCCAGATGGCTGAAGTGGATTTGACTCGTCCTCGAATGCACTCCAAAACTCCTGC
TCGTTTGATAGCCAGATTATAACCGTCTCTGTTAATCTCGCTAGTAGAATCTTTTGCAGCTTCT
CTTTACCAAGCAGAACATCCCCAGCAATTATGGCCAACTGTTGTAGCTTAGAAAACAATGCCTG
CATAAGAACAGACACAGATGATTCTGTGTGCTAAAACTTATAAACTGGGAACTATAAAACTAGA
TCAAAGAAGAGGGCGAGACCTGAAACGGTAAAGACGGCAGATGCAAGTCATCTGGTGTTTCGGT
TAAATAAATGAGTGCGTCTAATCGCGTTAGTCCTTCCCTAGAGTAGATGAAGCTCAAGACAAAC
TGCAGACAGAAGTAGTTTCTGAGTTTGTCAAATGCTTGAACCATATGGCGTTTCCATTCTTTCA
GTTCCGGTGCAGCACTACTGTTTAGAGCGGCACTATTCTCACCTTCTCCTCCGCCATTTTCAAT
CTGGAGTTTCCAGACTTTAACAAGTGATCTTGGTAAAAGTTCGTCAAGTATTGTAAACGCAGCT
CCAAGAAGCGCAAGCTGCTCAGAATCTGTCTCAGCTCTAGCGAGTACGGTATTATCTTGGAGCT
CAGGTAGACCATCCTCATCTGAATGGCCAGGCAAGGCTTTGATCAGAAAGTCGATGTATTTATC
ATATAGTTGCAATATCCTCGTTAGTACACTCTCACCAAAGTGTAACACAACTAGGTGTGTTAAC
TGCTCAAGTATGTCCTGAAAGAACAAATAAAGCTTCTATAAATTTATGCCAACAGAATCAAAGA
AAATAGTAAGATCAGTGTTCAAAATCAACTTACTTGCACAATTTGCATGAATCGAATGCTACAA
TCAGTCATCATAGTATCTGAAGCGATAGCGAATTCAGATAATATTGTCACAAAGTCAGAGGGTG
ATTCCAAGCCCTCATCAGTTTCATTCAAGTCAAAGATAACCCTTCGAGCCCGTCTAAAATTCAA
CTCCAACACTTCTTCAACATAAGGTCGGAACAGCACCAAAAATAGCTTAGACAGAAATAAGCCT
TGTGGTTCCAACACTTTGCAATAGTTAAGACAATCTTGAAGACATATACTGGCTGCCCGCAATG
CAGAAGCTGTTTCGGAAGGAGAAGCGTTTTCTTTAACCAACCGCACCAAATATTCAACTTCCCT
CTCTGCCCATTGAACAACTTTGTTGGAATATGCGGGATTATCATCGTCACCAAACATGGCTGCG
GATTCTTTTGTAGCCACTGAGATGTTAGAGAAAACAAGCTTAGAGAGAGTAGCAGGAAACGTGT
TTGGGCAAGTCAAACATGAAGGGAGAAAGGCCTCGATTCTTCTGCGGAGGCTTGTGGCGTAAAA
CTTTAGAAGCAATTGGTGAGCTGAAGGTCCTTTTCCAAGTCTGATTAACCCAATCAATGCATGC
TTCAATTCAGCTACACAAATCGAGGGTTGTTTAGCGATCCTAAGGAGCTGATCCTCAAGAACCG
CCTTTCTTTCCATAAAGGCAGACTTGTAAGAAGACATCTCGACTGATCCTTTAAGATCTGGACT
GCTTCTTTCCTCAGCATCCATTGCCTCCAGTGCTTCATCCACTTTATGTTCAGCCAAAAGAAGG
TCAATTTTCTCCAGGAACTCAGACTTTGGATCGGTTACTTCATTAGGCAAGGGGTCCTCTTCGA
CTTCAGCGTCATGTACATCACCAGGTAATCGATTCCAATCATCCATCTCACGGCAAACTCCAGC
CATCAGATCCTGCACAAGAATCCCCTGAGAAGAAATATGTTTCCGTAGCTCAACCAACTCATGC
TCCATCTCCACCGCTTCTTCAGATATTCTACACAAACCAAGCATAAAGAAATGAATCTCAGAAA
CTAGCACAACGGATACAAAGAAACATGACGTAACCTTTGAATCCGGAATTGCAGATTCAAAACT
CGCAAATGAAATAACAAAGAGAAGTTAGTAGCTTTTATACATTACCTTAAGAAAGCAAGGTACT
TGGTACGCATATCACCGCACATATTTTCCACAGCATCCTTTAAATCCATAAGCTCACAGCAAAG
CTTTCTAATCCC
Conservation Information
Conserved circRNAs NA
PMCS 0.131481321
Functional Information
Coding potential Y
Potential coding position 3341144-3339049(-)
Potential amino acid sequence MDLKDAVENMCGDMRTKYLAFLRISEEAVEMEHELVELRKHISSQGILVQDLMAGVCREMDDWN
RLPGDVHDAEVEEDPLPNEVTDPKSEFLEKIDLLLAEHKVDEALEAMDAEERSSPDLKGSVEMS
SYKSAFMERKAVLEDQLLRIAKQPSICVAELKHALIGLIRLGKGPSAHQLLLKFYATSLRRRIE
AFLPSCLTCPNTFPATLSKLVFSNISVATKESAAMFGDDDNPAYSNKVVQWAEREVEYLVRLVK
ENASPSETASALRAASICLQDCLNYCKVLEPQGLFLSKLFLVLFRPYVEEVLELNFRRARRVIF
DLNETDEGLESPSDFVTILSEFAIASDTMMTDCSIRFMQIVQDILEQLTHLVVLHFGESVLTRI
LQLYDKYIDFLIKALPGHSDEDGLPELQDNTVLARAETDSEQLALLGAAFTILDELLPRSLVKV
WKLQIENGGGEGENSAALNSSAAPELKEWKRHMVQAFDKLRNYFCLQFVLSFIYSREGLTRLDA
LIYLTETPDDLHLPSLPFQALFSKLQQLAIIAGDVLLGKEKLQKILLARLTETVIIWLSNEQEF
WSAFEDESNPLQPSGLQQGIRKLCCELMDLKDAVENMCGDMRTKYLAFLRISEEAVEMEHELVE
LRKHISSQGILVQDLMAGVCREMDDWNRLPGDVHDAEVEEDPLPNEVTDPKSEFLEKIDLLLAE
HKVDEALEAMDAEERSSPDLKGSVEMSSYKSAFMERKAVLEDQLLRIAKQPSICVAELKHALIG
LIRLGKGPSAHQLLLKFYATSLRRRIEAFLPSCLTCPNTFPATLSKLVFSNISVATKESAAMFG
DDDNPAYSNKVVQWAEREVEYLVRLVKENASPSETASALRAASICLQDCLNYCKVLEPQGLFLS
KLFLVLFRPYVEEVLELNFRRARRVIFDLNETDEGLESPSDFVTILSEFAIASDTMMTDCSIRF
MQIVQDILEQLTHLVVLHFGESVLTRILQLYDKYIDFLIKALPGHSDEDGLPELQDNTVLARAE
TDSEQLALLGAAFTILDELLPRSLVKVWKLQIENGGGEGENSAALNSSAAPELKEWKRHMVQAF
DKLRNYFCLQFVLSFIYSREGLTRLDALIYLTETPDDLHLPSLPFQALFSKLQQLAIIAGDVLL
GKEKLQKILLARLTETVIIWLSNEQEFWSAFEDESNPLQPSGLQQGIRKLCCELMDLKDAVENM
CGDMRTKYLAFLRISEEAVEMEHELVELRKHISSQGILVQDLMAGVCREMDDWNRLPGDVHDAE
VEEDPLPNEVTDPKSEFLEKIDLLLAEHKVDEALEAMDAEERSSPDLKGSVEMSSYKSAFMERK
AVLEDQLLRIAKQPSICVAELKHALIGLIRLGKGPSAHQLLLKFYATSLRRRIEAFLPSCLTCP
NTFPATLSKLVFSNISVATKESAAMFGDDDNPAYSNKVVQWAEREVEYLVRLVKENASPSETAS
ALRAASICLQDCLNYCKVLEPQGLFLSKLFLVLFRPYVEEVLELNFRRARRVIFDLNETDEGLE
SPSDFVTILSEFAIASDTMMTDCSIRFMQIVQDILEQLTHLVVLHFGESVLTRILQLYDKYIDF
LIKALPGHSDEDGLPELQDNTVLARAETDSEQLALLGAAFTILDELLPRSLVKVWKLQIENGGG
EGENSAALNSSAAPELKEWKRHMVQAFDKLRNYFCLQFVLSFIYSREGLTRLDALIYLTETPDD
LHLPSLPFQALFSKLQQLAIIAGDVLLGKEKLQKILLARLTETVIIWLSNEQEFWSAFEDESNP
LQPSGLQQGIRKLCCELMDLKDAVENMCGDMRTKYLAFLRISEEAVEMEHELVELRKHISSQGI
LVQDLMAGVCREMDDWNRLPGDVHDAEVEEDPLPNEVTDPKSEFLEKIDLLLAEHKVDEALEAM
DAEERSSPDLKGSVEMSSYKSAFMERKAVLEDQLLRIAKQPSICVAELKHALIGLIRLGKGPSA
HQLLLKFYATSLRRRIEAFLPSCLTCPNTFPATLSKLVFSNISVATKESAAMFGDDDNPAYSNK
VVQWAEREVEYLVRLVKENASPSETASALRAASICLQDCLNYCKVLEPQGLFLSKLFLVLFRPY
VEEVLELNFRRARRVIFDLNETDEGLESPSDFVTILSEFAIASDTMMTDCSIRFMQIVQDILEQ
LTHLVVLHFGESVLTRILQLYDKYIDFLIKALPGHSDEDGLPELQDNTVLARAETDSEQLALLG
AAFTILDELLPRSLVKVWKLQIENGGGEGENSAALNSSAAPELKEWKRHMVQAFDKLRNYFCLQ
FVLSFIYSREGLTRLDALIYLTETPDDLHLPSLPFQALFSKLQQLAIIAGDVLLGKEKLQKILL
ARLTETVIIWLSNEQEFWSAFEDESNPLQPSGLQQ(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017