Detail information of AT2G41670_circ_g.3


General Information
CircRNA Name AT2G41670_circ_g.3
ID in PlantcircBase ath_circ_017840
Alias NA
Organism Arabidpsis thaliana
Position chr2: 17374805-17375396  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene AT2G41670
Parent gene annotation Short integuments 2, mitochondrial
Parent gene strand +
Alternative splicing AT2G41670_circ_g.1 AT2G41670_circ_g.2
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G41670.1:3
AT2G41670.2:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAGATTGCTCATCGACCTAGTATATATGTTCTAGACTCCCCTGGTGTGTTGGTTCCAAGTATCC
CTGATATCGAAACCGGTTTGAAGCTTGCTCTTTCAGctgcttgatctcgtggagttgaagctca
aagaagtgattgctagggagcctactttacttgtaatggtggttggtgtccccaatgttggaaa
atctgcgc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 310
Transcript exons: 17374805-17374946,17375123-17375193,17375300-17375396
CTGCTTGATCTCGTGGAGTTGAAGCTCAAAGAAGTGATTGCTAGGGAGCCTACTTTACTTGTAA
TGGTGGTTGGTGTCCCCAATGTTGGAAAATCTGCGCTCATTAACTCGATCCATCAAATTGCAGC
AGCTCGTTTTCCGGTGCAGGAGAGATTAAAGAGAGCTACGGTTGGTCCATTGCCTGGTGTAACA
CAAGATATTGCTGGTTTCAAGATTGCTCATCGACCTAGTATATATGTTCTAGACTCCCCTGGTG
TGTTGGTTCCAAGTATCCCTGATATCGAAACCGGTTTGAAGCTTGCTCTTTCAG

Genomic sequence CTGCTTGATCTCGTGGAGTTGAAGCTCAAAGAAGTGATTGCTAGGGAGCCTACTTTACTTGTAA
TGGTGGTTGGTGTCCCCAATGTTGGAAAATCTGCGCTCATTAACTCGATCCATCAAATTGCAGC
AGCTCGTTTTCCGGGTAAGATATTGGTGTCTCAGCTTATCAGCAGTGTTGAGTACACATTTCAC
AGATATAGTCCGGACTGTGAATCCGATTTCTCCAAACTTAAACTTACAAGTTAATTATTTCATG
AACAGAATGATGAATGAAATGTAACGTGGCTTATTTCGTTATTGTATGCATTATGTGCATAGTG
CAGGAGAGATTAAAGAGAGCTACGGTTGGTCCATTGCCTGGTGTAACACAAGATATTGCTGGTT
TCAAGGTAATCTTTATTTGAAAATCCTCTTTTTTCCGTATGCCTGTTAATTGTTTGTGGATTTG
CTTCAGCATGATTTTTGAACACATGATGAAAATGTTCTGTGGTACAGATTGCTCATCGACCTAG
TATATATGTTCTAGACTCCCCTGGTGTGTTGGTTCCAAGTATCCCTGATATCGAAACCGGTTTG
AAGCTTGCTCTTTCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.24504886
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017