Detail information of Os02g0664300_circ_g.9


General Information
CircRNA Name Os02g0664300_circ_g.9
ID in PlantcircBase osa_circ_015864
Alias NA
Organism Oryza sativa
Position chr2: 26964737-26969115  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer
Parent gene Os02g0664300
Parent gene annotation Peptidase S8 and S53, subtilisin, kexin, sedolisin domain contai
ning protein. (Os02t0664300-01);Similar to predicted protein. (O
s02t0664300-02);Similar to predicted protein. (Os02t0664300-03)
Parent gene strand +
Alternative splicing Os02g0664300_circ_g.8 Os02g0664300_circ_g.10
Support reads 2
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os02t0664300-03:9
Os02t0664300-01:10
Os02t0664300-02:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAAAGAATTAATTAAATGGGTTGATGCCAAAACTACAAAATACGGCTCTTTAACTGTCCTGCGT
GAGAGGCGCTGTGGAAGACTTGGCACTGCATTGAAGgcatgacaatgtgcagttattggagaaa
ctgaagcagttggttctatttatcgagaggaagctagagaaaaaggtattgtgtcctatattgt
taatgagt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 943
Transcript exons: 26964737-26964809,26965372-26965457,26965532-26965583,26
965728-26965859,26966067-26966135,26966419-26966511,2696
7313-26967408,26968217-26968315,26968401-26968493,269689
66-26969115
GCATGACAATGTGCAGTTATTGGAGAAACTGAAGCAGTTGGTTCTATTTATCGAGAGGAAGCTA
GAGAAAAAGGATTTCATTCAATTGAGTTTCTACTCTGAACCTGATGGCCCTACAGTTGGAAATG
GCACCTTCAAATCCTCTATTTTAGTTCCAGGAGAACCAGAAGCATTCTATGTGGGTCCACCATC
TAGAGAAAAACTTCCAAAGAATGTTCTACCTGGGTCTGTTTTGGTTGGGTCAATTACCTATGGT
GCGGTAAGCTCTTTCAGCAAGAAAGATGACCAAAACCAGCATGCTCCAGCATCTTATAGTATCT
CGTATCTCATTCCACCATCAAAGGTTGATAATGATAAAGAAAAGGGAGTTTCATCTGGAAGAAA
GAGTATTTCAGAGAGATTGGATGACGAGGTTCGAGACACCAAGATAAAGTTCCTTTCTGGCTTT
AATCAAGAAACTGAGGATGACAAGTCTTCTTGGACGGCACTTGTTGCTTCTCTTAAGCCAGAGT
ATCCCAAGTATACACCTTTGCTTGCCAAAATTTTGGAATGCATAGTTCAGAAAGCAACTTCAGA
TGATAAGTTTAGCCATCAAAAAGAGATTATAGCTGCAGCTGATGAGGTTGTGGACAGTATTGAT
AAAGAGGATCTGGCAAAGTCTTTGTCCCTTAAACCAGATCCTGAAGATGAAGAGGCACAGAAAA
ATAAGAAAAAGATGGAAGAAACACGAGACCAGTTGGCTGATGCACTATACCAAAAGGGTCTTGC
ATTGGCAGAGATTGAGTCGCTAAAGACTGATGAGTCAACTGAGGCATCTGCTAAAGATGTTTTT
GAAGAGAATTACAAAGAATTAATTAAATGGGTTGATGCCAAAACTACAAAATACGGCTCTTTAA
CTGTCCTGCGTGAGAGGCGCTGTGGAAGACTTGGCACTGCATTGAAG

Genomic sequence GCATGACAATGTGCAGTTATTGGAGAAACTGAAGCAGTTGGTTCTATTTATCGAGAGGAAGCTA
GAGAAAAAGGTATTGTGTCCTATATTGTTAATGAGTACGAGACTCATTTCATATTTTAATTGCA
TGCTTTATTGAGGGCATGTAAATGTTGTTGATTATAAATAACATCATCTCTTTCACCAAACAAA
CCCCATGTCATTTCAGTTTTGGGGGTATGGGTGGTAACTATGGAAATTTAGCCAGTCAAAAATG
CTGTGAAGTGTGAATTATCATGTGTAAGCACTAGAGTTGTGTACATTAACATCTAATATTATCC
TGTGATTTGTGCATATTGCACCACCACCAAAACTTCTATCATTATTATGTAGGTTGCACATATG
CAATTGCAGTCCTATAGAGGAGTATTGTACTAATCAGGTTATTGTGGAAACAGGGATAGAGCAT
AAGTTCTTCTGGAATGTTTTGAAACATTTTCTTGTTACTGTTAAATTTTGTTGGGGGGGGGGGA
TGGGGATCGCTCTCTCGCTTGTTTAGATATTATGCAAGCTATTTGGTGCTTATCACAGATTGTG
CACATTTATTTTTAAAAGTCACCTATCCAGTATTGATGTATATGTTAATCTTATTGCAGGATTT
CATTCAATTGAGTTTCTACTCTGAACCTGATGGCCCTACAGTTGGAAATGGCACCTTCAAATCC
TCTATTTTAGTTCCAGGGTACTTCCTATTCAAATGTTCACTACTCTATTATTAGAATAACACTT
TGACACCACCAATGTTTAATTTTTTAGAGAACCAGAAGCATTCTATGTGGGTCCACCATCTAGA
GAAAAACTTCCAAAGGTACAGTGTCTTGATGGTGTATAACTTGATTAGATTTTTTTTTTACGAT
GTATCAGTCTCTGTATTTAGATGACCAGTTAACCACCATATCTGTCTTAAACTTTTTGGTTTAA
TATGCTGAATTGTACCATATTTGTATGGCAGAATGTTCTACCTGGGTCTGTTTTGGTTGGGTCA
ATTACCTATGGTGCGGTAAGCTCTTTCAGCAAGAAAGATGACCAAAACCAGCATGCTCCAGCAT
CTTATAGTATCTCGTATCTCATTCCACCATCAAAGGTCAGTGTACCAGATGCTGGTTCCCTTTT
TGTTTCACTATCAGCATTGCTGTTTTTGTGGTCTTGTATAATATGCTATACTGCAAGTTCAGGT
TTAAATCCATATTCAAGATCATCATAGGACCCTAAGTATTTTCCCTCTGTATATTTTCACTCTC
ATCATTCTATTTCATATTCAACTTATATGATGATTGTCTAAGACTTGCAGGTTGATAATGATAA
AGAAAAGGGAGTTTCATCTGGAAGAAAGAGTATTTCAGAGAGATTGGATGACGAGGTAGGAGCA
CTTTAGTCCTTAAGGTCCTTTGAACTCATTATCTTATATGAAGTGTTCTTTTCGGAAGATGTTT
CTTGGTAGAAAGTAAATAAATTCTATATGCATGCAACTGATCATTAATGACGAATTTGTGTTGG
ATAGATTGTTGTGGACTTAAGCTACTTAGAAAGAATCATAACTTCTACCTGTTTTAAGTTAATT
TATTTTAGGTAAAATGGTATTTCTGATTGCAATATAAAATCGTAGGGAATAATACTGTCTTGAC
ATTAAATTGATTGATCAGGTTCGAGACACCAAGATAAAGTTCCTTTCTGGCTTTAATCAAGAAA
CTGAGGATGACAAGTCTTCTTGGACGGCACTTGTTGCTTCTCTTAAGGTAGCAACAGCTTCTCT
TCCTTAGTCATATTTATCCTATGATTTGTTATCACACTAAGAAAGACCAGACATGATTATTTTA
TTGTTATATACATGGTGTTAAACTTAAATGCATCACTTTGTTAACAATATGCCAAAAAAGTGGT
CCTTTAGCATCCAAAGGTCACAATTTTAATTTTATAATACTGAAAGCTTGCAGTTCGCCTTATT
AGCACCAAAGGTTACCTTCGTTCTTCTATTTAGCATTCCGTCAAAATCAAAACTTCTGTTGGTT
TTCTCTTTTTTTTTTATCTGGAAAGAAAGATGTGGAATACCAACAGTACCCTTTGCTTTCTTCC
TCCTACAACCCATTCCCTATCTCAAATGAGATCAGCCATGGTTGCCATGGAGACTCTCGCCACC
CCATTGAGCTCACCAGGCATGACCAGTCAGGTCTCAGGTCTTGAGCTTGCCCAGCCGCTGCAGT
TCGAGCCTCAATCTCGTCTGACTGCTGGAAATATTTGTAGTTTGCAGATTCATAACAAAACTTG
ATGTCGACTCTAGTTTGTTTTCCTTATTTATTAGTTTTATTTATGAGCATCTGTAGTTTGCAGA
ATTGTGATTACAGTGGTACATGTAATCTTAGTTATTTTTAATTAATGCTAAGATGTTACAATAA
AGAAAGACAATGATATCAATGTAATTTGAATTTTTATTGCCTAACATGTTAAATTGTGCCATTT
TATTATAAAAATTATGAGCTACATTTGTTTATATTCTCCAATGTCAATTAAATCACCTTAACCA
TTATTGCATATTGCAGCCAGAGTATCCCAAGTATACACCTTTGCTTGCCAAAATTTTGGAATGC
ATAGTTCAGAAAGCAACTTCAGATGATAAGTTTAGCCATCAAAAAGAGGTAATTAATATTTCCT
TTTCATTTTATGTTTCCCTGCATCTTACTATGTTGAATAAAAAAAATGTTCAAACAATTTTACC
ACATCTATGGCTGGACAACATTGAGCAGGTTTTTGGTTTTTTTTTTTTTTTTTTTGTAAATCAT
TACTATGTCCAATGCTCCAAATTCCAATGTCTTTTACTAAATGAGCTGATTAGTTAGTTGATAC
AGTCTTTATGCAATAGAATGTTACCGTGTGTCTAATTCTTTCCAGTAGAGGATACTCCTGTGGA
AAAACAGGCATCAGGCATGCTGCCAAGACTCAGCAATGTTTGATCTGAAAATCAGGAGCCTTTA
CTGTTTTAAGTCTATCAAACCAACTTGTGTGCACTGGTATTAGCCAACACTCAGTCAATGGTTT
GCGTCTTTCACATGAAGCATAGCTATATATCTGTTTGATAAAATTGCCAAGGTCATTTATTAAC
CATATTTTGAAAGACAAAGGGCTATTGAGAACTCGAAATCTATGTTCAAACTTGTTTCTTTTCC
ACGTCAGAGCCTGGTAGCTAAAGATAATTCAATCTCTTCACTATTCCTTCAGGCAGTTTTGACA
TTTGGGAGGAGATTAGTACATTACTCTGTCAGATTAAATTATATCATATCATTTATTGCTAGAA
AAACCCAAAACTGTAGATAAATATTAATTACTTCTACATCGAAGTGAATTTTCACTTGACTTTC
AGTAATCGTTGCCACACAATACATCTATTGTATTTTGACTTTTTTAAATGAACCCTTCTGAAAT
TTTTTTTATGTTCCTGGTCTTAAGATTATAGCTGCAGCTGATGAGGTTGTGGACAGTATTGATA
AAGAGGATCTGGCAAAGTCTTTGTCCCTTAAACCAGATCCTGAAGATGAAGAGGCACAGGTAAA
TAGATTATTTAATTACTAGCATTTGTAATCAAATGTGCTCGCACTGTTCTGCTTAGCTGAAATC
TGCTGCTGACTGATAGAAAAATAAGAAAAAGATGGAAGAAACACGAGACCAGTTGGCTGATGCA
CTATACCAAAAGGGTCTTGCATTGGCAGAGATTGAGTCGCTAAAGGTCAGCATCTTCCATGTAC
TTTATACATATATTCACCTTATTGTCATATCTTTATAGTACAATTATGTAATAGTGTCAATTGC
CATAAGTAGACCAATCTGCCACCTGGGCCTGGCTTCACCAGAGTACTCTTATATAATACATTTC
TAATGCTTGAAAACCTTGTGCCAGCTTTGTAAGCTAAATTGTGGCTTAACATACTACTTGTTCT
AAGCCAGTATGTAAATTTAATACCACCGTGACAAATATTCCTTCACTTTATTCTTTCCTTGCCC
TTCTTAGGATGGTAAGATTTATGTTAAGTATGGTTTGCTTGGGCCTATTACGTTCTCAGACCCC
TCGAGAACCTTGCCTAGTCTATATATGTATACAACTGTTTATGTATTGACACTATTGAGGTACT
TTGTGTTCTCCAAGCATAGAAGTTTTGCTTTGTGTAAAGTAAGATTCTTAATTCTTTATTTGAT
GACAGACTGATGAGTCAACTGAGGCATCTGCTAAAGATGTTTTTGAAGAGAATTACAAAGAATT
AATTAAATGGGTTGATGCCAAAACTACAAAATACGGCTCTTTAACTGTCCTGCGTGAGAGGCGC
TGTGGAAGACTTGGCACTGCATTGAAG
Conservation Information
Conserved circRNAs osi_circ_012083
PMCS 0.100845391
Functional Information
Coding potential Y
Potential coding position 26968417-26964739(+)
26964742-26969050(-)
26965381-26969067(-)
Potential amino acid sequence MEETRDQLADALYQKGLALAEIESLKTDESTEASAKDVFEENYKELIKWVDAKTTKYGSLTVLR
ERRCGRLGTALKA*(+)
MPSMQCQVFHSASHAGQLKSRIL*(-)
MKSFFSSFLSINRTNCFSFSNNCTLSCLQCSAKSSTAPLTQDS*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017