Detail information of AT2G04400_circ_g.3


General Information
CircRNA Name AT2G04400_circ_g.3
ID in PlantcircBase ath_circ_012782
Alias NA
Organism Arabidpsis thaliana
Position chr2: 1533538-1533666  JBrowse»
Reference genome TAIR10.38
Type   ue-circRNA
Identification method CIRI, circRNA_finder, find_circ
Parent gene AT2G04400
Parent gene annotation Indole-3-glycerol phosphate synthase, chloroplastic
Parent gene strand +
Alternative splicing NA
Support reads 3
Tissues root, aerial
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered AT2G04400.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AATACGTTTCCTAGTACATTTGTTTTGTATCTTGCTCTGTGAGTATTGAGGAAAGACTAGAAAG
gaatagctggactttttggcaggaacatttctcatacttagagaccatatcataatacatctcc
a
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAATAGCTGGACTTTTTGGCAGGAACATTTCTCATACTTAGAGACCATATCATAATACATCTCC
AAATACGTTTCCTAGTACATTTGTTTTGTATCTTGCTCTGTGAGTATTGAGGAAAGACTAGAAA
G
Conservation Information
Conserved circRNAs NA
PMCS 0.300155039
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017