Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d038093_circ_g.1 |
ID in PlantcircBase | zma_circ_009099 |
Alias | Zm06circ00080 |
Organism | Zea mays |
Position | chr6: 147606741-147607920 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | CIRI2 |
Parent gene | Zm00001d038093 |
Parent gene annotation |
Cleavage stimulation factor subunit 77 |
Parent gene strand | + |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, endosperm |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d038093_T008:2 Zm00001d038093_T001:3 Zm00001d038093_T006:3 Zm00001d038093_T005:3 Zm00001d038093_T003:3 Zm00001d038093_T007:3 Zm00001d038093_T009:2 Zm00001d038093_T004:3 Zm00001d038093_T002:3 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.15144826 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
147606781-147607917(+) |
Potential amino acid sequence |
MHEPGYILEYTDFLCRLNDDRNVRALFERALSLLPPEESTEVWRRFAQFEQNYGDLSSMLKVAQ SVFEAGLKRFMHEPGYILEYTDFLCRLNDDRNVRALFERALSLLPPEESTEVWRRFAQFEQNYG DLSSMLKVAQSVFEAGLKRFMHEPGYILEYTDFLCRLNDDRNVRALFERALSLLPPEESTEVWR RFAQFEQNYGDLSSMLKVAQSVFEAGLKRFMHEPGYILEYTDFLCRLNDDRNVRALFERALSLL PPEESTEVWRRFAQFEQNYGDLSSMLK(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Han et al., 2020 |