Detail information of 3_circ_igg.25


General Information
CircRNA Name 3_circ_igg.25
ID in PlantcircBase ath_circ_023835
Alias NA
Organism Arabidpsis thaliana
Position chr3: 9444230-9452183  JBrowse»
Reference genome TAIR10.38
Type   igg-circRNA
Identification method CIRI
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 3_circ_ag.8 3_circ_ag.9 3_circ_ag.10 3_circ_ag.11 3_circ_ag.12 3_circ_ag.13 3_circ_ag.14 3_circ_ag.15 3_circ_ag.16 3_circ_ag.17 3_circ_ag.18 3_circ_ag.19 3_circ_ag.20 3_circ_ag.21 3_circ_ag.22 3_circ_ag.23 3_circ_igg.24 3_circ_igg.26 AT3G25840_circ_g.1 AT3G25840_circ_g.2 AT3G25840_circ_g.3 AT3G25840_circ_g.4 AT3G25840_circ_g.5 AT3G25840_circ_g.6
Support reads 12
Tissues root, aerial, inflorescences
Exon boundary   No-Yes
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTTAAAGAAAAAAAGGAGGCCTAACCAGGAGAAGTGATAAATCTCAATACCTTGTATGTTTTC
CTTGTGCAGCAGCTCTCTCTCCCCTCCAAGCAAAACcttctcctgtgtgccattaaagcattga
aagatgttaaggagtgtctttaagcattggtcgatgtcctggagaaaaacaacatcaggccctt
gagagacc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs NA
PMCS 0.402957786
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017