Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | AT1G05960_circ_g.11 |
ID in PlantcircBase | ath_circ_000922 |
Alias | Ath_circ_FC0206, AT1G05960_C1 |
Organism | Arabidpsis thaliana |
Position | chr1: 1814926-1815242 JBrowse» |
Reference genome | TAIR10.38 |
Type | ue-circRNA |
Identification method | CIRCexplorer, PcircRNA_finder, circRNA_finder, find_circ, CIRI2 |
Parent gene | AT1G05960 |
Parent gene annotation |
ARM repeat superfamily protein |
Parent gene strand | - |
Alternative splicing | AT1G05960_circ_g.7 AT1G05960_circ_g.8 AT1G05960_circ_g.9 AT1G05960_circ_g.10 |
Support reads | 3/3 |
Tissues | whole_plant/seedlings, leaf |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT1G05960.1:2 AT1G05960.4:2 AT1G05960.3:2 AT1G05960.2:2 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 0.566438685 |
Functional Information | |
---|---|
Coding potential | N |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | response to drought stress |
Other Information | |
---|---|
References | Chu et al., 2017;Pan et al., 2017;Chen et al., 2017a;Zhang et al., 2019 |