Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d035841_circ_g.1 |
ID in PlantcircBase | zma_circ_008920 |
Alias | Zm06circ00019, ZmciR277 |
Organism | Zea mays |
Position | chr6: 54795454-54797577 JBrowse» |
Reference genome | AGPv4.38 |
Type | e-circRNA |
Identification method | CIRI2 |
Parent gene | Zm00001d035841 |
Parent gene annotation |
Callose synthase 5 |
Parent gene strand | - |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, endosperm |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d035841_T001:3 Zm00001d035841_T006:5 Zm00001d035841_T002:5 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.115449843 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
54797549-54795531(+) 54797555-54795456(-) 54797091-54797548(-) |
Potential amino acid sequence |
MHSTANVNSFLPKSPKCSSHATKYRREDGIPNLCIH*(+) MHESQVSLFKYTFFWILLLCSKFSFSYFVQIQPLIKPTKDVMGVHNIHYEWHEFFPNASYNIGA IMSLWAPVLLVYLMDTQIWYAIFSTIFGGMTGALGRLGEKRIYVGRGMHESQVSLFKYTFFWIL LLCSKFSFSYFVQIQPLIKPTKDVMGVHNIHYEWHEFFPNASYNIGAIMSLWAPVLLVYLMDTQ IWYAIFSTIFGGMTGALGRLGEKRIYVGRGMHESQVSLFKYTFFWILLLCSKFSFSYFVQIQPL IKPTKDVMGVHNIHYEWHEFFPNASYNIGAIMSLWAPVLLVYLMDTQIWYAIFSTIFGGMTGAL GRLGEKRIYVGRGMHESQVSLFKYTFFWILLLCSKFSFSYFVQIQPLIKPTKDVMGVHNIHYEW HEFFPNASYNIGAIMSLWAPVLLVYLMDTQIWYAIFSTIFGGMTGALGRLGE(-) MGSCSTGLFNGYTNLVCHLLYDIWWHDWSTWATWGETNLRWPWNA*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to drought stress |
Other Information | |
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References | Han et al., 2020;Zhang et al., 2019 |